| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3357 |
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| Symbol | |
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| ID | 4922198 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 4006345 |
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| End bp | 4007574 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640164969 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001095482 |
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| Protein GI | 127514285 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.748521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00540648 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAGAATC AATCAAATAA AACACGTTTT CTACAGCTAA GCCCACTGAT GCGGGCCATG
GGTTTCGGCG TCTTGATCAG CATGACGGCT GTGGGCGGGG TTGCCCTCGG CGCCGAGGGA
CATGAGCACA AAGCAGAGTC AGCCAAGGGG CAAGTGTCTC AAGAGCAGGC TCACGACAAG
GAAAGAGAGC AGGGCGATGA AGCTGCGCTG GGTGGCGAAG AAGCCCATGG CGGTGAGCTA
GTGCTCAGCG AGGAGCAGCG TCAGCTGGCG GGAATTCGTG TGGAGCAGGT AAGCAGTCAG
GGCTTCAGCC TGGCCGCAGT CGCGACGGCC ACCCTGGTGG TGGACAGGGA GCGTACCGTG
ACCCTGGTGC CCCAGCTGGA TGTGCGGGTG TTGGCGCGTC ATGTGGTGCC GGGACAGGAG
GTCGCCAAGG GCCAGCCCCT GTTGACTCTG GGGGGCGCAG CCGTGGCTCA GGCCCAGGCG
GATTACATCA ATGCGGCAGC CGAGTGGAGC CGGGTGAAGC GAATGAGCCA GAGCGCTGTG
AGTGCCAGCC GCCGTCTGCA GGCCCAGGTG GATGCCGAGC TCAAGCGCGC CATACTCGGC
GCCCTCAAGA TGACGCCGGC GCAGATCAAG GCGCTGGAGT CGGATCCCGA GACCATAGGC
AGTTATCAGC TGCTGGCGCC GCTCGACGGC CGGGTGCAGC AGGATGTGGC CATGAAAGGT
CAGGTGTTCA GCGGTGGCAC CGCCCTGATG CAGCTCACCG ACGAGTCTCA CCTCTGGGTC
GAGGCCCAGG TGACGCCGAC CCAGTCTCAA CAGATCAAGG TAGGCAGTAA GGCGCTGGTG
AAGGTGGGCG ACTTTAGCCT GGAGGCCGAG GTGATCGGCC GCTCCCATGA GATCGACAGC
GTCACCCGCA CCGAGCAGAT CCTAGTGGCC TTCGCCAATC CGGGCCACGT GCTGCACGCC
GGACAATTTG CCGAGATCTA TCTGGCCGAC AACAACCAGG ATGGAGTGAT CTTGCCCGAT
GCGGCGCTGA CCCGCGGCGG TGACGGCGAC TGGCAGGTGT TTGTCGAAGA GGGGGATGGC
TTCGAGGCCG TCGAGGTCGA GGTGAGTGAG CGCCAACGCG GCATGAACCT GGTGCAGGGA
CTGAGTCCCA AGATGCGGGT GGTGGTCTCG GGCGCCTTCT TCCTGGCCTC TGAGCAGGCC
AAGTCAGGCT TCGACATTCA CAATCACTAA
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| Protein sequence | MKNQSNKTRF LQLSPLMRAM GFGVLISMTA VGGVALGAEG HEHKAESAKG QVSQEQAHDK
EREQGDEAAL GGEEAHGGEL VLSEEQRQLA GIRVEQVSSQ GFSLAAVATA TLVVDRERTV
TLVPQLDVRV LARHVVPGQE VAKGQPLLTL GGAAVAQAQA DYINAAAEWS RVKRMSQSAV
SASRRLQAQV DAELKRAILG ALKMTPAQIK ALESDPETIG SYQLLAPLDG RVQQDVAMKG
QVFSGGTALM QLTDESHLWV EAQVTPTQSQ QIKVGSKALV KVGDFSLEAE VIGRSHEIDS
VTRTEQILVA FANPGHVLHA GQFAEIYLAD NNQDGVILPD AALTRGGDGD WQVFVEEGDG
FEAVEVEVSE RQRGMNLVQG LSPKMRVVVS GAFFLASEQA KSGFDIHNH
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