| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3354 |
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| Symbol | |
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| ID | 4922195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3998747 |
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| End bp | 4001026 |
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| Gene Length | 2280 bp |
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| Protein Length | 759 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164966 |
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| Product | aminotransferase, class V |
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| Protein accession | YP_001095479 |
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| Protein GI | 127514282 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases
[COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00138183 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATCACA CATCCCCGCT TAGCCAGATC TACCTAGACG CCAACGCGAC CACTCCGGTA
CTGCCTCAGG CCGCCAAGGC AGCCCTAGGC GCCATGGAAG ATCTTTTCGG TAACCCCTCG
AGCAGCCATA TCACGGGCCT GAAAGCCAAG AGCCTGATGG AGCAGACCCG CCTTCGCGCC
AAGCAGATCC TGGGCAGCGG CCAGGGCAAT ATCATCTTTA CCAGCGGCGC CACCGAAGGC
ATACAGACCG CCATTCTATC CGCCCTCATC AAGGCCAAGG CCAGCCTGGA TCCCAACAAG
CAGTACAGCC TACTCTATGG CGCGACCGAA CATAAGGCGG TGCCCAACTC ATTGGCCCAC
TGGAATCAAC TGTTAGAGAT AGGCGCCGAG CTCAAGGCGA TTCCCGTCGA CGACAAGGGC
GCACTGGATC TCGACTTCAT CGCCGCAGAG GTGCCCAACG CCCTGATGAT CTGTACCATG
GCGGTCAATA ACGAAACCGG CGTCTATCAA GATCTTAAGG CACTCGATAC CTGCATTCGC
GACCACAATC CTGAGGTATT CTGGATGGTG GATTGCGTCC AGGCCCTGGG TAAACGCCCA
TTGGCCCTGG CGCAGACCAG CATAGACTAC GCGCCATTCA GCGGTCATAA GCTGTATGCC
CCCAAGGGGA TCGGCTTCGT CTATATACGT GATGGTGCCC CCTTCACCCC CTTCATCGCA
GGTGGTGGCC AGGAGGGCGG ACTGCGCTCA GGCACAGAAA ACCTGCCGGG CATGGCCGCC
CTTAATCAGG TGTTCGCCAT GCTGCTGGCC GAGCAAGACA GCGCCTTCCA TAGCCTGTCG
ACCCTTGTCG ATTACCGTGA GCAACTGGCC CAGGCATTGA AGCGCGCCTT CCCGACGCTG
GTGTTTAACC ACAGCTTCGA CAACAGCGTG CCCACCACCC TAAACTTTGC CGTGCCCGGC
TTTAGCAGCA AGGAGATCAT GGATCTCTTC GACGCCGCCA ATATCCGCGT TAGCTCAGGC
TCGGCCTGTA GCTCCAAGGT CACCCGCAGC TTCGTGCTCG ATGCCATGGG ACTCCCGGCC
TGGCAGAGCG AGTCGGCCAT TCGTCTCTCC TTCGGCCCGG CCATGACCCA AACAGAGGTC
GATCAAGCCT GCGAACGTAT TCAGTCGGCC GCCAATGCTC TAGGCAACAG CTGCCTCACA
CTGAGCAGTG GTGAGGCATC AGCAGATAAG CAGCCGCTAA ATGGCCTGGT TCAGCTCAAG
TCTGGCTCCA GCTGCAGCTG GATCTATGCC GACCAAGAGA GTAAACAGGC GGTGGTTATC
GATCCCCTGC CGGAACTTGA TCAGCGCATC GATACTCTGT TGCAGTGCCA GCAGCTCGAG
CCTATCGCCT TTATCGACAC CCATGGTCAC GCCGATCACG TCTCGGGCCG TGTGGCATTA
GCCGCCCGTT ATCTGCCCGA GCAGACAAGC GATCACCTTG GCTGGCCTGA GGATCACCAG
ATCACCGAGA TAGGCGCCAG ACCGGCGCAG GCAATCTCCC TAGGTCAGTA CTCTCTGGTG
AAGCTGGCCA CCCCAGGCCA CACCAATGAC AGCATCAGCC TGCTGCTGTG CTCGCCCCAA
GGCGAGGTGA GCTACGCCTT CTGTGGTGAT CTCGTATTGA TGGGTAGCCT GGGACGCACC
AACTTCGACA GCAGCTGCGC CAAGCAGATG TACAACAGCC TAAAGCTGCT ACACAGCCTG
ATTGGTGACG ATACCCTGCT CTGCCCAAGC CACGACTACA ACAACGAGTT CACCACCAGC
TTCGCCGCCG AGTTCAGGGT CAATCCACTG CTGAACGAGG TGATCAACGG CACCATCTCT
ATGGCGCAGT TCGAGCTGCA AAAAGCGAGA CTGGATACAC ATCTCAAGGA TGAAGCTGGC
AGCGAGATCA TCTGCGGCGC CTATACCGGC GGTTGCAGCA AAGCCAAGGT GAAAGAGTAC
GACAGCCAGT CGCTCCAGCT ACAGGTGAGT CAGTCGCCGC AGCTTAAGTT ACTGGATATT
CGCGAGCCCC ACGAATACGC CCTGCAGCAC GAGCTGGGCA CCCTGAGCGA GCAGACGATC
AACGTGCCTA TGACCAGGCT GGTGCAGTTC GTGCAGGAAC ATAAGCAGGA GAGTGACGCC
GAATGGGTGC TGGTCTGTCG CAGCGGCAGC CGCTCGCTGG TGGCGGCCCA GGCACTACAC
AGGCTCGGCT TTAACAAGAT AGCCCACCTC AAAGGCGGCT ACGCGCTGAG CGACAGTTAA
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| Protein sequence | MHHTSPLSQI YLDANATTPV LPQAAKAALG AMEDLFGNPS SSHITGLKAK SLMEQTRLRA
KQILGSGQGN IIFTSGATEG IQTAILSALI KAKASLDPNK QYSLLYGATE HKAVPNSLAH
WNQLLEIGAE LKAIPVDDKG ALDLDFIAAE VPNALMICTM AVNNETGVYQ DLKALDTCIR
DHNPEVFWMV DCVQALGKRP LALAQTSIDY APFSGHKLYA PKGIGFVYIR DGAPFTPFIA
GGGQEGGLRS GTENLPGMAA LNQVFAMLLA EQDSAFHSLS TLVDYREQLA QALKRAFPTL
VFNHSFDNSV PTTLNFAVPG FSSKEIMDLF DAANIRVSSG SACSSKVTRS FVLDAMGLPA
WQSESAIRLS FGPAMTQTEV DQACERIQSA ANALGNSCLT LSSGEASADK QPLNGLVQLK
SGSSCSWIYA DQESKQAVVI DPLPELDQRI DTLLQCQQLE PIAFIDTHGH ADHVSGRVAL
AARYLPEQTS DHLGWPEDHQ ITEIGARPAQ AISLGQYSLV KLATPGHTND SISLLLCSPQ
GEVSYAFCGD LVLMGSLGRT NFDSSCAKQM YNSLKLLHSL IGDDTLLCPS HDYNNEFTTS
FAAEFRVNPL LNEVINGTIS MAQFELQKAR LDTHLKDEAG SEIICGAYTG GCSKAKVKEY
DSQSLQLQVS QSPQLKLLDI REPHEYALQH ELGTLSEQTI NVPMTRLVQF VQEHKQESDA
EWVLVCRSGS RSLVAAQALH RLGFNKIAHL KGGYALSDS
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