| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3345 |
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| Symbol | |
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| ID | 4923100 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3989642 |
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| End bp | 3990565 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640164957 |
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| Product | lipid kinase |
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| Protein accession | YP_001095470 |
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| Protein GI | 127514273 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1597] Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase |
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| TIGRFAM ID | [TIGR00147] lipid kinase, YegS/Rv2252/BmrU family |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.056852 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTTC GCATCATACT CAATGGTAAG AAGGCCGGTG ACGAGCTGCT GCGTCAGGCG
ATCGCCAGCG TGCGCGCCGA TCATGAGATT CAGGTGCGAG TCACCTTCGA GGCTGGAGAT
GTGGCCCGTC TGGTGGATGA GGCCATCGCC GAGGGCTGTC AGCGTTTGGT GGCGGCGGGT
GGTGATGGCA CGCTCAACGA GCTGGTTAGC GCCCTGATGA ACCATGATAA GGATAAGCGC
TGCGAGCTGG CAATCTTGCC GCTGGGTACC GCCAATGACT TTGCCACCGC CGCCCGGGTG
CCAGCTGATC TGGAGGCGGC GCTGAGGCTG GCGGCGGAAG CTTCTGCCTA TGATGTGGAT
GTGATCCGCG CCAACGACAG GTATGTGGTG AATATTGCCA GTGGTGGTTT CGGCGCCCAG
GTCACCGCCA ACACGCCGCT GGCGCTGAAA CACTTTCTCG GTGGCGGCGC CTATACCCTG
TCCGGGCTGG TGCAGGCGCT CAATTTCAAG CCCTATGACG GCGAATTTAC CATACATGGC
GAGGCCAGCC AGCAGCAGTT GTTGGTGGGC GCCGTGTGTA ACGGCCGTCA GGCCGGTGGC
GGCCAGGTGC TGGCGCCGGA TGCCTATATC AACGATGGCC TGATGGACTT AGTCGCCCTA
CATCAGTTTC CCATCGAGGC CCTGGCGCAG GTGATCGCCG AGTTGCAATC GCCCAAGGCC
GACAATGAGT ATGTGAAATA TCATCGCGAT ACCCAGGCCA GCTGGCGCTC CAACCCGCCT
ATGCCCATCA ATCTCGACGG CGAGCCTATC GCCGAGTCTC ATGTGGAGTT CGAGCTTAAG
GCCGGCGCGA TCGCCATGGT ATTACCCGAA AATTGCCCCT TGCTGCAGCC GGGTAGTGAG
CCGACTAACA GAGAATCCCA TTAA
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| Protein sequence | MKLRIILNGK KAGDELLRQA IASVRADHEI QVRVTFEAGD VARLVDEAIA EGCQRLVAAG
GDGTLNELVS ALMNHDKDKR CELAILPLGT ANDFATAARV PADLEAALRL AAEASAYDVD
VIRANDRYVV NIASGGFGAQ VTANTPLALK HFLGGGAYTL SGLVQALNFK PYDGEFTIHG
EASQQQLLVG AVCNGRQAGG GQVLAPDAYI NDGLMDLVAL HQFPIEALAQ VIAELQSPKA
DNEYVKYHRD TQASWRSNPP MPINLDGEPI AESHVEFELK AGAIAMVLPE NCPLLQPGSE
PTNRESH
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