| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3272 |
|---|
| Symbol | |
|---|
| ID | 4921305 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3915046 |
|---|
| End bp | 3916086 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640164884 |
|---|
| Product | aldose 1-epimerase |
|---|
| Protein accession | YP_001095397 |
|---|
| Protein GI | 127514200 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2017] Galactose mutarotase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0965292 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000248794 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGTACGTT TTCGCCCGCT CGATGCCTGG AACGATCCCC GTGGTGGCCA GATTGAACGC
ATCATCATAG ACAACGGCAC CCTGGCCATC GAGGTGCTCA GCCTCGGCGG CATTATCCGC
TCCCTCTGGG CGCCGGATAA CAAGGGCGAG CGTGGCAATA TCGTACTGGG CTGCGACAGC
GCCCAGGATT ATCTGACCCA AGACGCCCAC CTGGGCGCCA TCGCCGGACG CTACGCCAAC
CGCATCGCAG GCGCCCGCCT GAGCCGGGAC GGTCAAGCAT TCAGTCTGGA CAACAACCAT
CAGGACAACT GCCTGCACGG TGGCCGAGAG GGCTTCAACC GTAAGCAGTG GCATATCGGC
CAACTCAGCG ATGGCGTGCG CCTCAGCCTG TTCAGCCCGG ATGGCGACAT GGGCTTTCCC
GGTAACGCCA ATGTCCAGCT CGACTACCGC CTGGTGGGCA ACAACCTCTA TGTGGAGATC
CTCGCCAGCA CAGATAAACC CTGCCCCATC AGCCTGACCC AGCACAGCTA CTTCAACCTG
GAAGGTTCAA GCGAGCGCAG CAGCCTGGGA CATATCATCC AGAGCGACAG CCAGCACTAC
CTCACCACTG ATGAGCAGGG GATCCCGACA GATGTGACTC AGGTAGCCGG CACGCCGCTG
GATCTCAGCC AGGGACAGTC CCTCGCGAGC CTCAAAACGG CGCTGGAAGC CGAGCCGACA
AGGGGCATAG ATCACTGCTA CCTGACGCCC AACCATGACG GCAAGGCCCT GAGCCGCTTC
GGCACTGTCA GCGCCCCGGC CTCAGGCAGA CGAATGACCC TCTACACCAA TCAGCCAGGT
GTACAGATCT ACGGCAGTAA CTTCCTCGAG GGCACCCTTG GCAAGCAAGG GCAGAAACTG
GCCTCATATC AGGCGGTATG CGTCGAGCCA CAGCAACTGC CCGACGCGCC CAATCAGGCA
CACCTAGCGG GCACGCCTTG GCTGATGCCG GGCGAGGTGT ATCACCACAT GAGTCGCTAT
CAGTTCGATC TCATCAAATG A
|
|---|
| Protein sequence | MVRFRPLDAW NDPRGGQIER IIIDNGTLAI EVLSLGGIIR SLWAPDNKGE RGNIVLGCDS
AQDYLTQDAH LGAIAGRYAN RIAGARLSRD GQAFSLDNNH QDNCLHGGRE GFNRKQWHIG
QLSDGVRLSL FSPDGDMGFP GNANVQLDYR LVGNNLYVEI LASTDKPCPI SLTQHSYFNL
EGSSERSSLG HIIQSDSQHY LTTDEQGIPT DVTQVAGTPL DLSQGQSLAS LKTALEAEPT
RGIDHCYLTP NHDGKALSRF GTVSAPASGR RMTLYTNQPG VQIYGSNFLE GTLGKQGQKL
ASYQAVCVEP QQLPDAPNQA HLAGTPWLMP GEVYHHMSRY QFDLIK
|
|---|
| |