| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3241 |
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| Symbol | |
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| ID | 4921525 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3874687 |
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| End bp | 3876579 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164851 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001095366 |
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| Protein GI | 127514169 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG4206] Outer membrane cobalamin receptor protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTAT CTTTGAACAG AATCACTTCA TCGATACTCA CATCGCTCCT CGTGTTGACC
TCTTCATCGG GGTTGGCCGC GCAGTCGATT GAACGTATCA CCATCAATGG CAACAGGAAT
GCCACTCAGA GTCCTGTTGC CACGACGGCG AACGTCAATA CCCTTAATCC GGACGACAGC
GATTCGACCC CGACTAACCT AGCACGTTTG TTGCATTCCG TTCCCGGAAT TAGTTTTGTC
GGCCAGGGAG GGCTTTTTCA AACCGTCGGA CTCAGGGGGA TGTCCCGTTG GCGAGTGCCA
ACCTTTATCG GTGACATTCC GCTCTACACA GAACGCCGGG CCGGAACGAC AGCTTCATTC
ATACCGCCGC AATTTCTCGA ATCGGTCAAT GTGATCAAGG GGCCCTCCTC CACCTACTAT
GGCTCAGGAG CCCTGGGTGG TCTGGTGCAG CTCAACCCCA AGCACGCCCA CAATGTGGCG
GCCAGCCTGA CCCTGACCGA TGCCAAGTAT GATCAGCAGA CCCTGGAAGC CGGTAACGAG
CAGTGGTCCG TGGCGTTGTC GAGACAACAC GCCGGCAATA GCGAAGATGT GCAGGGCAAC
ACCCTATATG ATCATTTCGA CCAGCAATCT GCGCTGATCG ATCACCACTG GGCATTCGAC
AATGGCCTGG AGAGCGACAC CTTTTACCTC TACAGCAATG GCGACGACAT AGGTAAGTCC
AGCAAGGACT ATCCCAACAA GAAGATCGTC TCCTACCCGG ACGAGCAGCA CCACCTGCTG
CAATGGCGCC TGACACGGCC TCACGACTGG AGCCTGAGCC TGTTCGCCCA CGACCAGAGC
CTGGAGACTG AGACCATACG CCCGGCAAAA CGGGTCAACA CTGTCAGTAA CGAGTCGCTG
GATCTTGGTG GTCACTGGGT CAAGGAGTGG CAAGGCGGCG ACTTCAATGG CCGCTGGGGC
GCCGATTATA TCGCACGTCG TGGCGTCAAG GCTTCGGAGT TCGAGCGGTC GCTGAAAAAT
GACAGCACCA GCCAGCAGCA GAATATCGAT GCCAGCCAGG ATGAATACGC CCTATTTGCC
GACGCCAGCA CTCAACTGGA TAGCTGGCAA CTGGTGGCGG GGATGCGCGC CGCGCGCTAT
CAACAGTCCG GCGAGGGGGC AGAGGATCAC TCAGACACCG CCGTCACCGG ATTTATCGGC
GCCGTCTATA CCCGCGGCGA GCAGCAGGAG TGGAAGATTA ACCTGGGCAA CGCCTACCGC
TTCCCTTCGC TGACCGAACA CTACTACAGC GGCAGCACGG GACGTGGCAC CATAGTGGCC
AATAGCGACC TAGTGCCAGA AAAATCCACC ACGGCCGAGC TGACCCTCAC CGATGTCTAT
GGCGACTTCG CCTGGCAGCT GGCGGCCTAC TACTCACGCG TCAGCGACTA TATCGAGCGC
GTCAGCATCG CCGAGGAGAC GCTCAGCTAT CGCAACGTCG ACAGCGGCAG CATCAAGGGG
CTGGAATATC GCATCGACTG GCGCCCCAGC GAGCAGTTTA CCCTGGGTAG CACGGGCCAG
TGGATAGACG CCGTCAGCGA CGAGGGCGAT CGCCTGGCCG ATGCCGGTCG CAACGAGCTT
GGCGTCAACA TGGAATACAG ATGGTCTGAC TTTAGTTTCA GCACAGGCTA TCGCTACCTG
GCACCGGTCA AGGAGCCCGC CTCGGGCGAG CTGACCCGCG ATGCCGCCAA CCTGGTCGAG
GCCGCCATGC GCTATCAGAT CACCCCGAAC CTGTCGGCAA AGGTGTGGAG CGAGAACCTC
ACCAACGAGA GCTACTTCTA TAGCAGCGAC GAGTTAGCGA CCCTGGCTCG GGGCAGGCAG
TTTGGCATCA CCCTGAGCTA TCAATTTCAG TAA
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| Protein sequence | MSLSLNRITS SILTSLLVLT SSSGLAAQSI ERITINGNRN ATQSPVATTA NVNTLNPDDS
DSTPTNLARL LHSVPGISFV GQGGLFQTVG LRGMSRWRVP TFIGDIPLYT ERRAGTTASF
IPPQFLESVN VIKGPSSTYY GSGALGGLVQ LNPKHAHNVA ASLTLTDAKY DQQTLEAGNE
QWSVALSRQH AGNSEDVQGN TLYDHFDQQS ALIDHHWAFD NGLESDTFYL YSNGDDIGKS
SKDYPNKKIV SYPDEQHHLL QWRLTRPHDW SLSLFAHDQS LETETIRPAK RVNTVSNESL
DLGGHWVKEW QGGDFNGRWG ADYIARRGVK ASEFERSLKN DSTSQQQNID ASQDEYALFA
DASTQLDSWQ LVAGMRAARY QQSGEGAEDH SDTAVTGFIG AVYTRGEQQE WKINLGNAYR
FPSLTEHYYS GSTGRGTIVA NSDLVPEKST TAELTLTDVY GDFAWQLAAY YSRVSDYIER
VSIAEETLSY RNVDSGSIKG LEYRIDWRPS EQFTLGSTGQ WIDAVSDEGD RLADAGRNEL
GVNMEYRWSD FSFSTGYRYL APVKEPASGE LTRDAANLVE AAMRYQITPN LSAKVWSENL
TNESYFYSSD ELATLARGRQ FGITLSYQFQ
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