Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3186 |
Symbol | |
ID | 4921681 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 3792254 |
End bp | 3793255 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640164796 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001095311 |
Protein GI | 127514114 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTCCA GAATTCTATC TCCTAAAACT CAATCTACCG AAGCAATGCA GCACGTACCT AATGTTTCGG TCATCGTTTT TAATGGATTC AGCCCGTTTC ATATTTCTGT CCCAAGTATC GTGTTCGGGC GTGATACTCT GAATGAAGCC TTCTTCAACC TACAGTTTAT TGCGGGAGAG GAAGGTTCAA TTATGTCTGA TATAGGGATG GAGATTCACG CCCGAGCCAA GCTCGATACA CTGGAGAAGG CTGACATAAT CATTGTTCCT TATTGGCGGA CGGTTGATGA ACGACCAAAT GATCAGCTAA TTGAGGCGTT ACGTCTTGCT CATGAGAGAG GAACATTGAT AGTCGGTTTG TGTCTTGGTG GCTATGTTCT GGCTTTCGCT GGGTTATTAG ATGGAAAGCG TGCCGCAACT CACTGGGAAC TAGAGCAAGA TTTCACTCAA CGTTTTCCGG AAACGTTACT CGATACCAAT GCGTTATATG TAGAAGATGG TGGAGTGATT ACATCCGCTG GCACCGCAGC AGGTATTGAT TGTTGTTTGT TCGTTTTCCG TAAATATTAC AGCAGTGCAA TCGCGAACCG TATTGCCCGA AGAATGGTGG TTCCACCATA TCGAGACGGA GGGCAAGCAC AATTTATTGA ACAACCCATA CCGATAACAA CATCCGATTT ACGCATCAAT GAGTTGATGG AGCGAATTAG AAACGATATT GGTCACAAGT ATACTCTCGA TGAACTCGCG GAGTCAGTGA TGATGACTCG CCGTACCTTT ACCCGTAAAT TTCATAAGGC AACAGGGATG GCCTTTGGAG AATGGCTGGC TTCTGAGCGA CTCAACCTAG CTCAGGAGCT GCTTGAGTCT ACTGATCTAA CCATTGAGCA AATAGTGACT AAAACCGGAT TCAGTTCGGT GTTTATCTTC CGTGATAAAT TCAAAGGACG TTATGCGGTC ACTCCAAACC GTTGGAGAAA AACGTTTCAT GAGCAGAAAT AA
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Protein sequence | MSSRILSPKT QSTEAMQHVP NVSVIVFNGF SPFHISVPSI VFGRDTLNEA FFNLQFIAGE EGSIMSDIGM EIHARAKLDT LEKADIIIVP YWRTVDERPN DQLIEALRLA HERGTLIVGL CLGGYVLAFA GLLDGKRAAT HWELEQDFTQ RFPETLLDTN ALYVEDGGVI TSAGTAAGID CCLFVFRKYY SSAIANRIAR RMVVPPYRDG GQAQFIEQPI PITTSDLRIN ELMERIRNDI GHKYTLDELA ESVMMTRRTF TRKFHKATGM AFGEWLASER LNLAQELLES TDLTIEQIVT KTGFSSVFIF RDKFKGRYAV TPNRWRKTFH EQK
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