| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3173 |
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| Symbol | |
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| ID | 4921950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3776933 |
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| End bp | 3778390 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640164783 |
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| Product | succinic semialdehyde dehydrogenase |
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| Protein accession | YP_001095298 |
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| Protein GI | 127514101 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGGAA TTAAAGACAC TCAGTTAATC AAACTTTCCT CCTATATCGA CGGCAGATGG
ACGGTGGGCG AGCAGCGCTT CGACGTGGTG AATCCGGCCA GCCAGGAGGT GATCGCCCAG
GTGGTTGACG CCAGTCTCGA CGATACCCAG GAGGCCATAT TGGCCGCCAA GCGGGCACTG
CCTGAGTGGT CTAAGCGTTC AGCTAACGAG CGCGCCGCCC TGATGCGTAA ATGGTTCAAC
CTGATGATGG AGCACCAGGA AGATCTGGGC CGCTTGCTGA CCCTGGAGCA GGGTAAGCCC
CTGGCCGAGG CCAAGGGGGA GATCGCCTAT GGCGCCGCCT TTATCGACTG GTTCGCCGAG
GAGGGCAAGC GTGTCTATGG TGACACTATT CCGGCGCCTG CTAACGACAA GCGTATTTTG
GTGATCAAGC AGCCTGTGGG CGTGGTGGCC TCTATTACTC CGTGGAACTT CCCCAACGCC
ATGATCGCCC GTAAGGCGGC GGCTGCGCTG GCGGCCGGTT GTACCTTCGT GGCACGTCCC
TCTCCGCTGA CACCGCTGTC GGCCCTGGCG ATGGCCGAGC TGGCAGAGCG CGCAGGTATT
CCTGCCGGGG TGTTCAACAT AGTGGTGGGC GAAGATGCCG TGGGCATGGG CAAGGTGCTG
ACCCAGCATC CGGACGTGGC TAAGTTCACC TTCACCGGCT CTACCGCCGT GGGCAAGATT
TTGCTGGCTC AGTGCGCGAC CAGCGTGAAG AAGGTCTCCA TGGAGCTGGG GGGCAATGCG
CCCTTTATCG TGTTCGACGA TGCCGATATC GACGCCGCGG TGCAGGGCGC CCTGATCTCC
AAGTATCGCA ACGCCGGGCA AACCTGTGTC TGCACCAACC GTATCTTTGT GCAGAAGGGA
GTTGCCGCGG CCTTTACCGA AAAATTTACC GCCGCCGTGG CCAATCTCAA GTTGGGCGAT
GGCCTGGGCG ATGGCGTGAC CGTCGGCCCC ATGATCTCCA AGGATGCAGT GCAGAATGTG
CTTAAGCTGG TGGATGACAC AGTGGCAAGC GGTGCCAAGC TGGTAACCGG CGGCCAGCCG
AGTGAGCTGG GCGAGAGTTT CCTGGCACCT GTGATCGTCA CAGATGTGAC CAACGAGATG
CCGCTGGCAC GCAACGAGAT CTTCGGCCCC GTGACCCCTA TCATCAGCTT CGATAGCGAG
GCTGAGGCGC TGGCCATGGC CAACGATACC GAATATGGCC TGGCCGCCTA TTTCTACGCC
CGGGATATCG GCCGCATCTT CCGCGTCGCC GAGGGGCTGG AGTATGGCAT GGTGGGCGTC
AACGAGGGGA TCATCTCCAA CGCCGCCGCA CCTTTTGGCG GGGTGAAGCA GTCGGGCAAC
GGCCGTGAAG GCTCCAAGTA TGGCCTGGAC GATTATCTGG AAATTAAATA CCTGTGCCTC
GGTGGCCTGG ATAAGTAG
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| Protein sequence | MQGIKDTQLI KLSSYIDGRW TVGEQRFDVV NPASQEVIAQ VVDASLDDTQ EAILAAKRAL
PEWSKRSANE RAALMRKWFN LMMEHQEDLG RLLTLEQGKP LAEAKGEIAY GAAFIDWFAE
EGKRVYGDTI PAPANDKRIL VIKQPVGVVA SITPWNFPNA MIARKAAAAL AAGCTFVARP
SPLTPLSALA MAELAERAGI PAGVFNIVVG EDAVGMGKVL TQHPDVAKFT FTGSTAVGKI
LLAQCATSVK KVSMELGGNA PFIVFDDADI DAAVQGALIS KYRNAGQTCV CTNRIFVQKG
VAAAFTEKFT AAVANLKLGD GLGDGVTVGP MISKDAVQNV LKLVDDTVAS GAKLVTGGQP
SELGESFLAP VIVTDVTNEM PLARNEIFGP VTPIISFDSE AEALAMANDT EYGLAAYFYA
RDIGRIFRVA EGLEYGMVGV NEGIISNAAA PFGGVKQSGN GREGSKYGLD DYLEIKYLCL
GGLDK
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