| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3170 |
|---|
| Symbol | |
|---|
| ID | 4921947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3773303 |
|---|
| End bp | 3774493 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164780 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001095295 |
|---|
| Protein GI | 127514098 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3263] NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTACC AGGTTATCTT GTTAGGGATC GCCGCGCTGA TTGCCGTGGG GATCCTGTTG
CATCACCCCT CAAAGACCCT GGGGTTGCCC AGTCTGTTGA TCTTCATGGG CGTGGGCCTG
AGCCTGGGCA ATGGCGAGTT TAATTTTGTC TACGATAACC TCACCCTGAC CTCCACGGTC
GGGGCGGTCG CTCTCAACAT GATCGTCTTC GTCGGTGGCA TCAATACCAA GACGGAGAGC
ATTAAGCTGG CCTACCGTGA GGGTGGGGTG CTGGCAACCT TCGGGGTACT GCTGACCACG
CTTATTCTGG GGGCGCTCCT CTATCCGCTG ACGGAATGGA GCCTGGTGAT CTGCCTGTTG
TTTGCTGCCG TGGTCTCCTC GACCGATGCC GCGGCCGTGT TCTCGATTCT GGAGTCGAAG
AAGCTCAAGC TCAAGGAGCG CACGGATACT GTGCTGGAGT TCGAGTCGGC CACCAACGAC
CCGGTCGCCC TGGTGATGGT GATGATACTC ACAGGTATCG CTCTGGCGCC GGATGCGCCG
GTATCACCTT GGGCAATAGG CCAGATGCTA GGCTTGCAGA TCGCCTTAGG GATAGGCGTC
GCTTTCGTGG TGGCCAGGCT AGCGGTGTGG GCGCTGAACA GCATACATCT GGAGGAATAT
GGCCTGATCC CTGTGTTTGT GCTCGCCAGT TTCGTGCTGG CGGCCTATGG CAGCGAGCTG
GCCGGCGGCA ATATCCTGAT CGCCTCCTAT GTGTGTGGCG TGGTGATGGG CAACGGCATA
CGTCGGGGCG TGGAGGTGAC GCGGCATTTC TTTAACAGCC TCTCCTGGCT GGCGCAGTCG
CTGATGTTCA TCATACTCGG GCTGCAGATC TTCCCCCAGA CCCTGTTTAG TGTTTTCTTC
CTGTCGCTTA TCCCGGCGGC GTTGCTGATG CTGGTGGCCA GGCCGCTGGC GGTGCAGATT
TGTTATCTGC CGTTTCGTCA GGCGAGCTGG AAGAAGCGGC TGTTTATCTC CTCCATAGGT
CTCAAGGGGG CGACACCTAT CGTCTTCTCG CTGATCCCAG CGGCGGCCGG TGTCGAGGGG
GCGGTTGAGA TGGTGCACCT GGTGTTCTTC ATCGTGCTCT TCTCAATCCT GTTGCAGGGC
GCGGCCATAG AGCCCCTGGC CAAGCGGCTT GGGCTCAATA GCGACAGCTA A
|
|---|
| Protein sequence | MSYQVILLGI AALIAVGILL HHPSKTLGLP SLLIFMGVGL SLGNGEFNFV YDNLTLTSTV
GAVALNMIVF VGGINTKTES IKLAYREGGV LATFGVLLTT LILGALLYPL TEWSLVICLL
FAAVVSSTDA AAVFSILESK KLKLKERTDT VLEFESATND PVALVMVMIL TGIALAPDAP
VSPWAIGQML GLQIALGIGV AFVVARLAVW ALNSIHLEEY GLIPVFVLAS FVLAAYGSEL
AGGNILIASY VCGVVMGNGI RRGVEVTRHF FNSLSWLAQS LMFIILGLQI FPQTLFSVFF
LSLIPAALLM LVARPLAVQI CYLPFRQASW KKRLFISSIG LKGATPIVFS LIPAAAGVEG
AVEMVHLVFF IVLFSILLQG AAIEPLAKRL GLNSDS
|
|---|
| |