| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3169 |
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| Symbol | |
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| ID | 4921946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3772275 |
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| End bp | 3773273 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164779 |
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| Product | WD-40 repeat-containing protein |
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| Protein accession | YP_001095294 |
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| Protein GI | 127514097 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACAC TCAAACGCCT GTGCCATCTC TTAAGCCTAG CCCTGTTACT CGTCGTCCTC
TCCGGCTGCT CAGATAAGCA GACAAGCCAG CCACCGCAGA GCCTCAAGCG TCTGGTGGAG
GACAATCTGG TGGCTGGGCT ACTGGCAGAG GATGCCAGCC TGGCCGTCAC ATTGAGTCGA
AGTCGGGATC TCAGCGTCTG GAACCTCCCC GAGGGCAAGC AGCGCTTTCA CTGGCCGGCT
AACGCCTTCG AGCATCCGGG TTATCAGCTG GCCTTGTCGG GCAACAAGCG CTATCTGGCC
TATGGCGGCA AACGCCAAAT TACCCTGATA GATATCCAGC AGGGCAATAT CCAGCTGACC
TGGCAGGTCA ACGGCTTTGA CGACTACGCC AGCATCTCGA CCCTAGCACT CAATCAGTCG
GGCAGCCGCA TCGCCATCGG CATGAACGAA GGCAGCGTGA TCTTGGTGGA TTTCAAGGCG
CAGCAGTTTT CCCTGTTTAA GCAGCACGAC GCCGAGGTGG CCTTCCTCGC CTTTGGCGCC
TCGGATGAGC GCCTGTTATC CGCCGGCCAT GATGGCAAGG TGCTCTGGTG GGTCAGTGGC
AGCGGCGAGA TAATAAAGCA ATTATCCCTG CCCCAACGCA TCACCAGCCT GGCGTTTGAC
GAGGCCGATA GGCGCCTCTT CTTCGCCGAC AACCTGGACA ATCATCAACT GCTGGCATTC
GACACAGGTG AGGCGCTGAG TGAACTGAGC TACTTCGAGC GCTACCGCTA TTTTCGCCGC
GCCCGCTTCA TTCACAGGGG CGATGAGTTG ATCACCGCCA CCTCGAAACA GACTATCTTT
CGCTGGCAGG TCGCCACCGG CAAGGAGCTA GAACGCTGGC AGCTTACCCC CTTCTCCATG
GGCACGACCG TCATGGATAT GGTGAGCTAT GGTGGGCAGC TCATCACCCT CAGCTCAGAC
GGCGCCTTAG AGTACTGGGA GTTAGGCTCT GGAAATTAA
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| Protein sequence | MSTLKRLCHL LSLALLLVVL SGCSDKQTSQ PPQSLKRLVE DNLVAGLLAE DASLAVTLSR
SRDLSVWNLP EGKQRFHWPA NAFEHPGYQL ALSGNKRYLA YGGKRQITLI DIQQGNIQLT
WQVNGFDDYA SISTLALNQS GSRIAIGMNE GSVILVDFKA QQFSLFKQHD AEVAFLAFGA
SDERLLSAGH DGKVLWWVSG SGEIIKQLSL PQRITSLAFD EADRRLFFAD NLDNHQLLAF
DTGEALSELS YFERYRYFRR ARFIHRGDEL ITATSKQTIF RWQVATGKEL ERWQLTPFSM
GTTVMDMVSY GGQLITLSSD GALEYWELGS GN
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