| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3136 |
|---|
| Symbol | |
|---|
| ID | 4922003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3729217 |
|---|
| End bp | 3732021 |
|---|
| Gene Length | 2805 bp |
|---|
| Protein Length | 934 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164746 |
|---|
| Product | FAD linked oxidase domain-containing protein |
|---|
| Protein accession | YP_001095261 |
|---|
| Protein GI | 127514064 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0247] Fe-S oxidoreductase
[COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.502756 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATTA ATTATTCAGC AGTAGTCGCA GATTTACGCG CCAAACTCGG TGATGAAGCC
GTCTCAGACG ATGCAGTGCG TCGTTTCGCC TGGTCCACCG ACGCCAGTTA TTTCCGTATC
GTGCCAGAGG TGGTGGTACA CGCCGAGACT CTGGAAGATG CCCGTGACAC ACTCGAAGTC
GCGCGCCAGC ACAATGCTCC AGTGACCTTC CGCGCCGCCG GCACCAGTCT CTCAGGCCAG
GCCATCGGCG AAGGTATCTT GTTGATCCTA GGTCACGACG GCTTCAGAAA GATCGCCGTC
AGCGAGGATC ACAACCAGAT CTCACTCGGC GCGGCCGTTA TCGGTGGCGA CGCCAACCTG
GCGCTTAAGC CATTCAACAA GAAGATTGGC CCGGATCCGG CCACCCTGGC CTCGGCCATG
GTAGGCGGTA TCGTCTCTAA CAATGCCTCG GGCATGTGCT GTGGCACGGC CCAGAACAGC
TACCAGACCA TAGCCTCGGC CAAGCTACTC TTCGCCGACG GTACCCGTCT GGACACAGGC
TGTGAGCGCT CAAAAGAAGC GTTTCGCGAG TCTCACCAGC AGCTGCTTAG CGAACTGACC
GATCTCGCCA AGCTCACCGC CAGCAACCCG GTACTGGCCG ATCGCATTCG CAAGAAATAC
TCCATCAAGA ACACCACAGG CTACAGCATT AACGCCCTGG TGGACTTCGA GGATCCGTTC
GAGCTGATCA ACCACCTGAT CGTCGGCGCC GAGGGCACCC TGGCCTTCGT CGAAGAGGTC
ACCTACAACA CGGTCGATGA GGCCAAGTTC AAGGCCTCGG CCATGGCGGT ATTCTTCAAC
ATGGAAGATG CGGCCCGCGC CATTCCGCCA ATCAAATGCG ACAGCGTCGC GGCCGCCGAG
CTGCTGGACT GGGCGTCGAT CAAGGCGGTC ACTGGCAAGA AGGGGATGCC AGACTGGCTG
AGCGAGCTGC CAGAAGGCGC CGCCATCCTG CTTATCGAAT CCCGAGCCAA CGACGAGGCG
ACCCTGGATG CCTACACCCA GGATGTGATC GCCAAGCTGG CCCATATCGA AACCGAGCGT
CCTATCAGCT TCAGCCGTGA CCCCGAGGTC TACAGCAAGT ACTGGGCGAT GCGCTCTGGC
CTCTTCCCTA TCATAGGCGG CGAGCGTCCG AAGGGCACCT CGGTGATCAT CGAAGACGTG
GCCTTCGAGC TGGAACACCT GGCCAATGCA GCCACAGATT TGACCGCCCT GTTCCACAAG
CATGGCTACC CTGAAGGGGT GATCTACGGC CATGCGCTGG CGGGTAACTT CCACTTCATC
ATCACGCCGA CCTTTGCCTC ACAGGAAGAT ATCGATCGCT TCCACGGCTT CATGCAAGAC
GTGGCCGAGA TGGTGATCAA CAAGTATGAC GGCTCCATGA AAGCCGAGCA CGGCACAGGC
CGCGCGGTAG CACCATTCGT CGAGATGGAA TGGGGCGCCG ATGCCTACAC CCTGATGAAG
CGCATCAAGC AGATCTTCGA TCCCCAAGGC CTGCTAAACC CTGGGGTGAT CCTCAACGAC
GACGCCAACG TGCACGTCAA GAACATCAAG CCATGCCCTG TGGTCGACGA CTTTGTGGAC
AGATGTATCG AGTGTGGCTT CTGTGAGAAG ACCTGTCCGA CCTCGGCGCT TAACTTCACT
CCGCGTCAGC GTATCGCCAC TCTGCGTGAA ATCGCCCGCC TGGAGGCCTC TGGCGACAAA
CAGGCCGCCG AAGAGATGCG CGCCGCCGCC AAGTATGACG TGGTCGACAC CTGCGCCGCC
TGTCAGCTCT GTACCATCGC CTGTCCGGTA GACAACAGCA TGGGTCAGCT GGTGCGTAAG
CTGAGAACCC CATACATCAC CACGACCGAA CAGAAGGTGC TGGACTTCCA GGCCAAACAC
TTCGGCGCCG TCAACCAGGT GATCAGCACA GGTTTCGACG TGCTCAGCAT CATCCACAAG
GTCACAGGCG ACAGCGTCAC CAACGGCCTG ATGAAGGTGG GCCGAATGGT GTCCAAAGAG
GTGCCTTACT GGAACCCAGA TTTCGCCAAG GGCGGCAAGC TGCCTAAGCC AAGCCCAGCC
TCGCCAGACA AGGAGACTGT GGTCTACTTC CCGGCCTGTG GTGGTCGCAC CTTCGGCCCG
ACCCCGAAAG ATCCCGACAA CCGCACCCTG CCAGAAGTCG TAGTCACCCT GCTGGAGCGC
GCCGGTTACA ACGTGGTCAC CCCAGACAAC ACCCGTCACC TGTGCTGCGG CCAGATGTGG
GAATCTAAGG GTGACTTCAA GAACGCCGAC GCCAAGCGTG ACGAGCTGAT CGATGCCCTG
AGCGCCCTGA GTGACAACGG CAAGGTGCCT GTGGTGGTGG ATGCACTCTC CTGTACCTAC
CGTACCCTGA CAGGCAACCC TAAGGTGGAA ATTACCGATC TGGTCGAGTT CATGCATGAC
AAGATCTTGC CTAAGCTGAC CTTTACCAAG AAGGTCAACG TGGCACTGCA CCTTGGCTGT
AGCGCCCGCA AGATGAAGCT TGAGCCTAAG ATGCAGGCCC TGGCCGATGC CTGTAGTAAC
GGCGTTAAGC TGCCAGAGGG GATCGAGTGT TGTGGTTACG CCGGCGAGAA GGGCTTGTAC
AAGCCTGAGA TCAACGCCAG CGCCCTGCGC AACATCAAGA AGCTGATCCC GGTCGATATC
AAGGAGGGCT ACTACGCCAA CCGCATGTGT GAAGTGGGTC TGACCCAGCA CAGCGGCATC
TCCTATCGCC ACCTGGCCTA TCTGCTGGAA GAATGCAGCC GCTAG
|
|---|
| Protein sequence | MSINYSAVVA DLRAKLGDEA VSDDAVRRFA WSTDASYFRI VPEVVVHAET LEDARDTLEV
ARQHNAPVTF RAAGTSLSGQ AIGEGILLIL GHDGFRKIAV SEDHNQISLG AAVIGGDANL
ALKPFNKKIG PDPATLASAM VGGIVSNNAS GMCCGTAQNS YQTIASAKLL FADGTRLDTG
CERSKEAFRE SHQQLLSELT DLAKLTASNP VLADRIRKKY SIKNTTGYSI NALVDFEDPF
ELINHLIVGA EGTLAFVEEV TYNTVDEAKF KASAMAVFFN MEDAARAIPP IKCDSVAAAE
LLDWASIKAV TGKKGMPDWL SELPEGAAIL LIESRANDEA TLDAYTQDVI AKLAHIETER
PISFSRDPEV YSKYWAMRSG LFPIIGGERP KGTSVIIEDV AFELEHLANA ATDLTALFHK
HGYPEGVIYG HALAGNFHFI ITPTFASQED IDRFHGFMQD VAEMVINKYD GSMKAEHGTG
RAVAPFVEME WGADAYTLMK RIKQIFDPQG LLNPGVILND DANVHVKNIK PCPVVDDFVD
RCIECGFCEK TCPTSALNFT PRQRIATLRE IARLEASGDK QAAEEMRAAA KYDVVDTCAA
CQLCTIACPV DNSMGQLVRK LRTPYITTTE QKVLDFQAKH FGAVNQVIST GFDVLSIIHK
VTGDSVTNGL MKVGRMVSKE VPYWNPDFAK GGKLPKPSPA SPDKETVVYF PACGGRTFGP
TPKDPDNRTL PEVVVTLLER AGYNVVTPDN TRHLCCGQMW ESKGDFKNAD AKRDELIDAL
SALSDNGKVP VVVDALSCTY RTLTGNPKVE ITDLVEFMHD KILPKLTFTK KVNVALHLGC
SARKMKLEPK MQALADACSN GVKLPEGIEC CGYAGEKGLY KPEINASALR NIKKLIPVDI
KEGYYANRMC EVGLTQHSGI SYRHLAYLLE ECSR
|
|---|
| |