| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3124 |
|---|
| Symbol | |
|---|
| ID | 4922087 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3713327 |
|---|
| End bp | 3715858 |
|---|
| Gene Length | 2532 bp |
|---|
| Protein Length | 843 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640164734 |
|---|
| Product | ATP-dependent helicase HrpB |
|---|
| Protein accession | YP_001095249 |
|---|
| Protein GI | 127514052 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000637258 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCCTT TGAACCAAGT AGCTACTCAA GAATTTAACC AAGTCCCTAT CCAGACACTC
TTGCCCGAGA TCCAGCGGAC GCTGGCGGAT AATGCCCAGC TGATCTTGCA GGCGCCGACC
GGCGCAGGTA AGTCGACCGC GCTGCCCCTG GCCATGCTCG ACTGGCCTGA GATTGAGGGG
AAGATCTTGA TGCTGGAGCC CAGACGCATT GCGGCGCGCA GCGTGGCGCA CTTTATTGCG
GCCAGGCGGG GTGAACCCGT GGGTCAGTCG GTAGGTTTTC GGGTGCGCGG CGAGTCGAGC
GTGAGCGCCA AAACCCGCCT CGAGGTGGTG ACCGAAGGCG TATTAACTCG GATGATCCAG
CAGGACCCTG AGCTTAGCGG CTATGGCCTG ATCATCTTCG ATGAGATCCA TGAGCGCCAC
CTCACCACAG ATCTGGGTCT GGCATTGGCG CTGGAGGTGC AGGCCTCGTT TCGTGAGGAT
CTTAAGATCC TTGCCATGTC GGCGACCCTG GACGGCCTGC CGTTACAGGC CCTGATGCCA
GATGCGGCCA GCCTGGTGAG TGAGGGGCGC AGTTTTCCCG TGAGCCTGAG CTATCGTCCA
AGCCCTGCCC ATCAGGATTG GTTGCTGCAC ATGGCCAAGG TGATCGTCGA GGCGGTGGCC
GAGCATCAAG AGGGCTCATT GCTGGCCTTC TTGCCAGGCC AGCGAGAGAT TGCAAGACTG
CAGATGCTAT TAAGCGAGCG GCTCGACCCT AAACAGTTTT TAATTACTCC TCTCTATGGC
GCCCTGCCGC CGAGCCAGCA AGACAGCGCC ATCGCGCCGC CACCGCCTGG GATGCGTAAG
CTGGTGCTCT CTACCAATGT GGCCGAGTCG AGTCTGACCA TCCAAGATAT CCGCCTGGTG
GTGGATGCCG GCTACAAGCG TCAGGCCAGC TTCAATCCTA AGACGGCGGT GAGTCGCTTG
TCGCTCAAAC GGATCAGCCA GTCGTCGGCG GCTCAGCGTA GCGGCCGCGC CGGTCGTCTG
AGTGAGGGAC ACTGTATCCG CCTCTGGCCG CAGCAGGAGC ATGAGCGCCT GCTCAAGGCC
GATGAACCTG AGATCCTCCA TGGGGACTTA ACCAACGCAG TTCTGGATGC CGCTTTTTGG
GGCGTGAATA CCCTCGATGC GCTGCCGTTG ATCTCGCCCC CCTCCGAGGC TAACGAGACG
GTAGCCTCGG ATCTGCTGCA AGCCTTGGCG CTGGTGGACA GCGACAGACG CATAACGGCC
CATGGCCGCG CCGCCTATCG GCTTGGCTGT CATCCGCGTC TGGCCCACAT GCTGCTGGCC
GCCAAAGAGC TGGACGGCAT TGATGCTCCC TATTACCTGC CCCTTGCCGC CGTGCTGGCG
GCGCTACTGG AATCGCGCGC TCTGGCGAGA CGCGGCGCCG ATATCAGCCG TTATCTGAAT
GATGCCAGAG GCGGCGAAGT TGCCAAGCTG GCGCAGCAAT ATCTGGCCAG GATGAATGCT
GCTCGAGGCA ATCAGATAGC CAAGGCCATC GGCGAGAGTC GCGACCAGGA TATCGCAACC
CTGCTGGCGC TAGCCTTTCC CGATCGCATC GCCAAGGCCC GGGGCGCCAA GGGGTATCAG
CTTGCCTGCG GCGCAGGTGT TGCCCTCAAT GATGACGATG CCCTGCAGGG CGAACCTTGG
CTGGTGGTCG CCGATTTTCA GGAGAGTGAA GGCCAGAGCA GCGGCCGTAT TCTGCTGGCG
GCCAAGCTGG ATGCCGCGCT GTTTGACGGA CCGCTGGCCA GTCAGGTGAA GTCAGTTGTT
GAGACCGGAT GGGATGAGGA GAAGGCGCGT TTTTACGGGT TAACTCAGCG GCGCATCGGC
GCTATCATAT TGGGTGAGCG CCCGCTGGCG ACCCTTGATG AAGAGACGAT CAAGCAGGCC
ATCTATCAGC TTATCCGCAC CAAGGGGCTC TCCCTGCTGG GATTTGATGA TAAGGTGGAA
CAGCTTCGCC TGCGCGTTGC CCTGGCGAGT AAGCTCGCTC TTGCAGGCGA TTGGCCGGAT
CTGAGTGATC AGGCCTTGCT CGCGACGCTG CCTGAGTGGC TTGGCCCCTA TCTTGACGGG
GTGCGCCGCC TGAACCAGCT CAAGGGACTG GATTTCTATA CCTTGCTCCA CAACCAGATG
GAGTGGGGAC AACAACAGAT ATTAAACGAG GCGCTGCCGA GCCATTGGCC CATGAAGACG
GGCACTCGGG CGGCGATACG ATATGAGATG TCGGGGCGGG CGCTGCTGAG TGTGCGTTTG
CAGGAGGCGC TGGGCATGGC CGAGAGCCCC AGGCTGGCCC AGGGGCAACT TGTGGTGACC
ATGGAGCTGC TGTCGCCGGC GATGCGACCG CTGGCGCTGA CTGCCGATCT GGCCAACTTC
TGGGCCGGCC CCTATGTCGA GGTGAAGAAA GAGATGAAGG GACGCTACCC TAAGCATCTG
TGGCCGGACG ATCCCGCCAA CACCTTGCCG ACCAAATTAA CCAAGAAAAA GATGTCAGCT
AAGGGGCTCT AG
|
|---|
| Protein sequence | MRPLNQVATQ EFNQVPIQTL LPEIQRTLAD NAQLILQAPT GAGKSTALPL AMLDWPEIEG
KILMLEPRRI AARSVAHFIA ARRGEPVGQS VGFRVRGESS VSAKTRLEVV TEGVLTRMIQ
QDPELSGYGL IIFDEIHERH LTTDLGLALA LEVQASFRED LKILAMSATL DGLPLQALMP
DAASLVSEGR SFPVSLSYRP SPAHQDWLLH MAKVIVEAVA EHQEGSLLAF LPGQREIARL
QMLLSERLDP KQFLITPLYG ALPPSQQDSA IAPPPPGMRK LVLSTNVAES SLTIQDIRLV
VDAGYKRQAS FNPKTAVSRL SLKRISQSSA AQRSGRAGRL SEGHCIRLWP QQEHERLLKA
DEPEILHGDL TNAVLDAAFW GVNTLDALPL ISPPSEANET VASDLLQALA LVDSDRRITA
HGRAAYRLGC HPRLAHMLLA AKELDGIDAP YYLPLAAVLA ALLESRALAR RGADISRYLN
DARGGEVAKL AQQYLARMNA ARGNQIAKAI GESRDQDIAT LLALAFPDRI AKARGAKGYQ
LACGAGVALN DDDALQGEPW LVVADFQESE GQSSGRILLA AKLDAALFDG PLASQVKSVV
ETGWDEEKAR FYGLTQRRIG AIILGERPLA TLDEETIKQA IYQLIRTKGL SLLGFDDKVE
QLRLRVALAS KLALAGDWPD LSDQALLATL PEWLGPYLDG VRRLNQLKGL DFYTLLHNQM
EWGQQQILNE ALPSHWPMKT GTRAAIRYEM SGRALLSVRL QEALGMAESP RLAQGQLVVT
MELLSPAMRP LALTADLANF WAGPYVEVKK EMKGRYPKHL WPDDPANTLP TKLTKKKMSA
KGL
|
|---|
| |