| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3116 |
|---|
| Symbol | |
|---|
| ID | 4922079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3700723 |
|---|
| End bp | 3701943 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164726 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001095241 |
|---|
| Protein GI | 127514044 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.0000795792 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAGCA ACTTACATCA GGCGGGGGTC ACGCTACTTA AGCAGCTGGG GCGCCATGCG
GATCTCATCA TGGATGTCTA CCTCTCCGGC TCTGTGACCG AGGAGGGCGA GCGCGCCGGA
GCCATCGACA AGCTGCGTAA GGCGGATATT CTGTGGCAGC CCGAGGGCGA ACAGGGGCTG
AGGCTGAAAC GCTCGGTGCG CGCCCTGCTG GAAGAGGTGC TGAGTGATGA GCGCAATCGT
CAAATAGATG CCAACGTGGG CTCATCCCTG GCCACCATCA AGACCCTTGC CGATCACTAT
AAGGAAGCCC GTCAGGCCGC CGACTACAGC GCCAGCGAGG CCTATCTTGC GGATCTCAGC
GAGCAGGTCT ACAGCTTCAC CGAGGGGCTG AAATACTCGA TTCGTGTGCT CTGGAGCCGT
ATCAACAACG AGTTCGGCTA TGTGGGTACC ATCAACGCCA AGATACGTGA AAACGAGCTG
GCCCAGAGTC AGGTGACCGA GCTGCTCAAC GGCCTGGAGA TGTTCCAGTT TAGCGAGCTG
GGTGAGATCG CCGGCGATAT CCGCGAGCTG CGTAAGCTGC TGGTGACTCG CTTGCAGGAG
ACCCTGAGCG ACTGTACCCA GGAGCTTAGC GTGGTGCAGG GGCGTCTGCT GGAGCTGCTG
GGACGATTCC GTCAGATCCA GGGACGTACC CGTCTGCTCA AGGGCTGGTT GCTCTACACG
GATATGCATC CAGATTATGA GGTGGCGGAT CATGTGAGTC ACAAGCAGCT GCCGACCTTG
TTTAACCGCG CCGAGGCGAT TCTGGCACCG GCGGCGGTGG ACGTGACCAA CACGGCGCAG
GAGGTCGAGC TGCTGGCCAT GGTGTCACAG ATCAAGAGCA TTAGCCGCGC CGGTCGCGAT
CTTGTGATGC GCGATCATGA CGTGCCCTTC GCCTTGGTGG AGGCGGAAGA CTTCGATATT
CCCGACAATC CGCTCAAGCT GGCGGTGGAT GAGTATTTCT GCGCCGTGAT CGACTCTGGG
CTGAGACAAT CGGCGCTGGA CTATCATCAG GCCAAGTCGC TCAGCTGGGA TACGGAGAGC
TGGCTGTATC AGGTGATCTG CGGCTACGAG GGCTTGCCCG AGGAGCATAG ACGCTATTTC
GAACTTGAGC CCATAGGTGA GCGCCATCCT GTGTATAGCG GCAACTTCAT CATACGTGAC
GTGGAGTTGT GGTTGGCCTA A
|
|---|
| Protein sequence | MSSNLHQAGV TLLKQLGRHA DLIMDVYLSG SVTEEGERAG AIDKLRKADI LWQPEGEQGL
RLKRSVRALL EEVLSDERNR QIDANVGSSL ATIKTLADHY KEARQAADYS ASEAYLADLS
EQVYSFTEGL KYSIRVLWSR INNEFGYVGT INAKIRENEL AQSQVTELLN GLEMFQFSEL
GEIAGDIREL RKLLVTRLQE TLSDCTQELS VVQGRLLELL GRFRQIQGRT RLLKGWLLYT
DMHPDYEVAD HVSHKQLPTL FNRAEAILAP AAVDVTNTAQ EVELLAMVSQ IKSISRAGRD
LVMRDHDVPF ALVEAEDFDI PDNPLKLAVD EYFCAVIDSG LRQSALDYHQ AKSLSWDTES
WLYQVICGYE GLPEEHRRYF ELEPIGERHP VYSGNFIIRD VELWLA
|
|---|
| |