Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_3105 |
Symbol | |
ID | 4922210 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3685078 |
End bp | 3685959 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640164715 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001095230 |
Protein GI | 127514033 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.432402 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACAGCT TTGAGGGAAT TGTCGAATTT ATAGCGGTTG CCGAGTCTAA CGGTTTCTCT GCGGCGGCTC GTCAACTGGG ACTTTCTACC AGTCATGTCA GTCGTCAGGT GGCAAGACTC GAGGTGCGTT TGGGCTGCGC CCTGTTTGCG CGTACTACGC GCAGTGTCAG TCTGACTCAG GCCGGGCAGG GCTATTATCG TCAGTGTCAG AATCTGTTGG TGGGACTTAG GCAAGCGAAT GAGGAGGTGA CCCAGCAGCA GTTGCAGTTG AGCGGCACGC TGAGAGTCAG TGCCGCAGGT GCCTTTGCTG AGCAGTATAT TGCGCCGGTA TTGATTGACT TTGCAAGGCA GCATCCAGCG TTGACGATAG AGATGGACTT CAATAGTCGT ATGGTCAATT TTGTCGAAGA GGGTATCGAT TTCGCCATTC GTTTTGGGGC GCTTAAAGAT TCGGGGCTCG TGGCGCGTAA GCTGGCGAAT CGAGACATGA TGGCCGTGGC CAGTCCTCAG TATCTGGCTG AGTTTGGCAT TCCCAAGACG CCGCAGGATC TTAGACTGCA TAGCTGCATC ATCTCGAACA ATGATCACTG GCTGTTCCAG CAAGGGGACG GCGAGCTGAG CATTAAGGTC GAGGGACGCT GGCGCAGTAA TAATGTGCCT GCCGTGATTG CGGCGGCAGA GCAACACCTG GGTATTGCCT ACCTGCCTAA GAGTAGCTTT ATTGCGCCGC TAGCCAAGGG CAGTCTGGTA CCTGTATTGT CCTCATACTG GAATCGGGGG ATCACCAGCT GGATTGTCTA TCAAAATCGT CGTTTCTTGC CTATGCGGGC GCGAATGGCT ATAGACCATC TGTTAGCACA CTTTGCCGAT TGGCTGGAGT GA
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Protein sequence | MDSFEGIVEF IAVAESNGFS AAARQLGLST SHVSRQVARL EVRLGCALFA RTTRSVSLTQ AGQGYYRQCQ NLLVGLRQAN EEVTQQQLQL SGTLRVSAAG AFAEQYIAPV LIDFARQHPA LTIEMDFNSR MVNFVEEGID FAIRFGALKD SGLVARKLAN RDMMAVASPQ YLAEFGIPKT PQDLRLHSCI ISNNDHWLFQ QGDGELSIKV EGRWRSNNVP AVIAAAEQHL GIAYLPKSSF IAPLAKGSLV PVLSSYWNRG ITSWIVYQNR RFLPMRARMA IDHLLAHFAD WLE
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