| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3105 |
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| Symbol | |
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| ID | 4922210 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3685078 |
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| End bp | 3685959 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164715 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095230 |
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| Protein GI | 127514033 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.432402 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGCT TTGAGGGAAT TGTCGAATTT ATAGCGGTTG CCGAGTCTAA CGGTTTCTCT
GCGGCGGCTC GTCAACTGGG ACTTTCTACC AGTCATGTCA GTCGTCAGGT GGCAAGACTC
GAGGTGCGTT TGGGCTGCGC CCTGTTTGCG CGTACTACGC GCAGTGTCAG TCTGACTCAG
GCCGGGCAGG GCTATTATCG TCAGTGTCAG AATCTGTTGG TGGGACTTAG GCAAGCGAAT
GAGGAGGTGA CCCAGCAGCA GTTGCAGTTG AGCGGCACGC TGAGAGTCAG TGCCGCAGGT
GCCTTTGCTG AGCAGTATAT TGCGCCGGTA TTGATTGACT TTGCAAGGCA GCATCCAGCG
TTGACGATAG AGATGGACTT CAATAGTCGT ATGGTCAATT TTGTCGAAGA GGGTATCGAT
TTCGCCATTC GTTTTGGGGC GCTTAAAGAT TCGGGGCTCG TGGCGCGTAA GCTGGCGAAT
CGAGACATGA TGGCCGTGGC CAGTCCTCAG TATCTGGCTG AGTTTGGCAT TCCCAAGACG
CCGCAGGATC TTAGACTGCA TAGCTGCATC ATCTCGAACA ATGATCACTG GCTGTTCCAG
CAAGGGGACG GCGAGCTGAG CATTAAGGTC GAGGGACGCT GGCGCAGTAA TAATGTGCCT
GCCGTGATTG CGGCGGCAGA GCAACACCTG GGTATTGCCT ACCTGCCTAA GAGTAGCTTT
ATTGCGCCGC TAGCCAAGGG CAGTCTGGTA CCTGTATTGT CCTCATACTG GAATCGGGGG
ATCACCAGCT GGATTGTCTA TCAAAATCGT CGTTTCTTGC CTATGCGGGC GCGAATGGCT
ATAGACCATC TGTTAGCACA CTTTGCCGAT TGGCTGGAGT GA
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| Protein sequence | MDSFEGIVEF IAVAESNGFS AAARQLGLST SHVSRQVARL EVRLGCALFA RTTRSVSLTQ
AGQGYYRQCQ NLLVGLRQAN EEVTQQQLQL SGTLRVSAAG AFAEQYIAPV LIDFARQHPA
LTIEMDFNSR MVNFVEEGID FAIRFGALKD SGLVARKLAN RDMMAVASPQ YLAEFGIPKT
PQDLRLHSCI ISNNDHWLFQ QGDGELSIKV EGRWRSNNVP AVIAAAEQHL GIAYLPKSSF
IAPLAKGSLV PVLSSYWNRG ITSWIVYQNR RFLPMRARMA IDHLLAHFAD WLE
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