| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3084 |
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| Symbol | |
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| ID | 4922327 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3663756 |
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| End bp | 3665351 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164694 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_001095209 |
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| Protein GI | 127514012 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTATG ACTCACATGC CCATGTAGAT CTGCAAAAAT ATGCATCACT GATCGATCTG
ATCGAAACGG CCGCCGAGCG CTATGGCGAC AAGACAGCCT ATGTGTGTCT GGGCAAGGCC
AGCAGTTTTG CCGATATAGA ACGCGACTCC CGCTACTTTG CCGCCTACCT GCAGCAACAC
ACTCAGCTGG AAGTGGGCGA TAAGGTCGCC ATCCAGCTGC CCAACATCAC CCAGTTTGTT
ATCGCCGCCT ATGGCGCGCT CAGGGCCGGC ATGATACTGG TCAACACTAA TCCCTTGTAT
ACCCAGCGAG AACTGATCCA CCAATACAGA GACTCGGATG CCAAGGCCTT GGTGGTGCTG
AGCGATCTGC TGCCCACGCT GGAAACTGTG ATCCCCGAGA CCCAGATAGA GACGGTTATT
TCTACCCACC CGCTGGATCT GATAGCAACC CAACCCCAGG CCGACAGCCA GCTCGCCCAC
ATAGGTTTTA ACCAGGTATT GGCCCTGGGC AGCCAGGCCG AGTACCGCCC GGTAGAGGTC
GCGCAGCAGA GCCTGGCGGC GCTGCAATAC ACGGGCGGCA CCACGGGCCT CTCCAAGGGC
GCCATGCTGA GTCACAGCAA CCTGCTGGCC AACATGCTGC AGGTGCAGTC GCGCCTGGCC
AGCAAGTTTG TCGAGGGCGA AGAGATCTTT ATCGCGCCCC TGCCCATCTA CCATATCTAT
GCCTTCATGG TGAACTTCGT CTACTTCGAG CAGGGCGGAT GCAGCGTACT CATCCCCAAC
CCGAGAGACA TCAGCGCACT GATTCAGACC ATGTCCCAGC ATCCCTTCAC CGGCTTTGCT
GGCCTCAACA CCCTGTTTGT CGGTCTGTGC CATCAGCAGT CCTTCCAGGC GCTGGACTTT
AGTCACCTCA AGATCACCAT CTCTGGTGGC ACGGCGCTCA CTCAGGCGGC GGCCAGCATC
TGGCAATCTA CTACGGGCTG CACCATCTCC GAAGGTTATG GCCTATCGGA AACCTCGCCC
GTGGTCTCCC TCAACGCGCC GGGGCTCGAG TGTCTTGGCA CCATAGGTCG CCCGGTGATC
GACACTCAGG TGAAGATCCT CGACGCCAGC GAGCAGGAGG TGCCTCAGGG TGAGATAGGC
GAGCTGGCGG TCAAGGGGCC ACAGGTGATG AGCGGCTACT GGCAGAAGCC AGAGGAGACC
GCCAAGGTGA TGACCAGCGA TGGATTCTTC AAGACAGGGG ATATCGCCCT CGCCACTGAA
GATGGCATGC ACAAGATAGT GGATCGCAAG AAGGATATGA TCATCGTCTC CGGCTTCAAC
GTCTATCCTA ACGAGGTGGA AGATGTGCTG GCCGCCCATG AGAGCGTGCT GGAATGCGCC
GTAATTGGCG TCGACGACAG CCGTAGCGGC GAGGCCGTCA AGGCCGCCAT AGTGCTGCGA
GAACCTGAGC TGGCAAACGA TGCCACTAAG CAGGCCCTGC TCGAACATTG CCGCGCTCAG
CTGGCCGCCT ATAAGCTCCC CAAGATAATC GAGTTCATGC CCGCACTGCC GAAATCGACC
GTGGGTAAGA TACTGAGACG TGAGTTGAGG AAGTAG
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| Protein sequence | MAYDSHAHVD LQKYASLIDL IETAAERYGD KTAYVCLGKA SSFADIERDS RYFAAYLQQH
TQLEVGDKVA IQLPNITQFV IAAYGALRAG MILVNTNPLY TQRELIHQYR DSDAKALVVL
SDLLPTLETV IPETQIETVI STHPLDLIAT QPQADSQLAH IGFNQVLALG SQAEYRPVEV
AQQSLAALQY TGGTTGLSKG AMLSHSNLLA NMLQVQSRLA SKFVEGEEIF IAPLPIYHIY
AFMVNFVYFE QGGCSVLIPN PRDISALIQT MSQHPFTGFA GLNTLFVGLC HQQSFQALDF
SHLKITISGG TALTQAAASI WQSTTGCTIS EGYGLSETSP VVSLNAPGLE CLGTIGRPVI
DTQVKILDAS EQEVPQGEIG ELAVKGPQVM SGYWQKPEET AKVMTSDGFF KTGDIALATE
DGMHKIVDRK KDMIIVSGFN VYPNEVEDVL AAHESVLECA VIGVDDSRSG EAVKAAIVLR
EPELANDATK QALLEHCRAQ LAAYKLPKII EFMPALPKST VGKILRRELR K
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