| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3071 |
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| Symbol | |
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| ID | 4922671 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3646825 |
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| End bp | 3647334 |
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| Gene Length | 510 bp |
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| Protein Length | 169 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164681 |
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| Product | lipoprotein |
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| Protein accession | YP_001095196 |
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| Protein GI | 127513999 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG3015] Uncharacterized lipoprotein NlpE involved in copper resistance |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGATTA GCGCGCGACT CCTCCCCCTT GTTCTGCTCA CCCTAGGCGC CTGCGCCCAA
CAGACCAGTC AGGCACCCGA ACCTCAGACA GAAGCGCAGG CCTCACAAGC GTCAGAGCCT
CAAGCCGCTC AGACTATGCC CCTTGGCGAC ACCAGCCGTA ACGCGCTGGA TTGGCCGGGC
CTCTATAAAG GCACCCTGCC CTGCGTCGAC TGTCAGGGGA TCGCCATGAG CCTCAAGCTT
AATGGTGACA ACAGCTATCA ACTCTCTCAA CAATATCTTG GCAAGCAAAA CCTTGGTGAG
CAAAACCTTG GTGAGCAAAA TCAAGCAACC GATGTCGTCC TTGAGGGGCA GTTTAGCTGG
AATGAGATGG GCAGCAAGAT CACCCTAGAT AGCAAGGCCA GAGGCATGAA GCTTCAGGTG
GGCGAGAATA TTCTCTTTAT GCTGGACGAT AAGGGGGAGC GGATTAAGGG GGCGCTGGCC
CAGCAATATC AATTGTTGAA AGCCAATTGA
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| Protein sequence | MKISARLLPL VLLTLGACAQ QTSQAPEPQT EAQASQASEP QAAQTMPLGD TSRNALDWPG
LYKGTLPCVD CQGIAMSLKL NGDNSYQLSQ QYLGKQNLGE QNLGEQNQAT DVVLEGQFSW
NEMGSKITLD SKARGMKLQV GENILFMLDD KGERIKGALA QQYQLLKAN
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