| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3034 |
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| Symbol | |
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| ID | 4923015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3604337 |
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| End bp | 3605905 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640164644 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001095159 |
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| Protein GI | 127513962 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAGAG ATGCCCCTCA GGAAGCTAAG CTGACCTACG CTAAATACAA GAAGAGCATG
CTCTATTCGT TGCTGCTCCT GCTGTTCCTG TCTGCCGTAT TGTCAATTGT CTATCTGATG
ACTAGCAGCA ATATCTCCCG CGAACGTGAG ATGCGCCAAT ATGCCGAGCT TGGCAACATG
CAGGCTAGCC TACTCACAGA ACTCAATATC GTCGGCACTG ACTTGGCCTA TTATGCTCAC
AGTGAACTGG CCGTCTCGAC CCTGGAGGAT AAAGATCCTA AGGCTAAGCG CTATCTCACC
TCGCTGATGT TCCAGATAGG TAATCTCTAT AAACATTACG ATCAGATCCG CCTGCTTGAT
GACAGGGGCG ATGAGGTGAT CCGTATCGAT CAGCTGCGGG ATAACAGCCT CCAATTGGTG
CCGGACGAGG CGTTGCAGAA TAAGGCGGAC CGCTACTATT TCCGTGAGCT TGCCGGGCTC
AAACCCGAAG AGATCTACGC CTCGCCGTTC GATCTCAATG TGGAGCATGG AGAGGTGGAG
CAGCCTCTTA AGCCCACCAT ACGTTTCGCC ACGCCCATCT ACAGCATGGC GGGGGATTTT
ATCGGCGCCG GGGTGATCAA TTATAAGGGC AAAGATCTTT TGCAGATCAT CGACGATCTG
AATGTGCATG AGGGTGACAG GGTCTATCTG CTGAATCACA AAGGTTTCTA TCTCAAGGGT
GATCAGCCGG ACAAGGAGTG GCGTTTCATG TTCCCCGAAC GTGAGCAGCT GGGCTTTGAC
AGTGACTACC CTACAGCCTG GCGACGCATG CAGCAGTCGG AGCTGGGCAA GGTGGTGACG
GACGATGGCG AGTACTATTT CAGCCGCTTC AAGCTTGCGC CCCATTCGCT GTTTAATATA
GTGAATAGGG AGAGCGCCTA CCTGGTGATG TTTGTGCCCG AGAGTACGAT TGAGGCTGCT
CAGCAAAATC TGACTAATAG TGCTCTCATC GCCTTTTTAT TGGTGTCACC CATGTTTATC
TTCCTGGCTT ATAAATTGGC TGGCGCTCAG GTTGAGCAGC AGCGCCTGTT TAGTCAGCTT
ACCTTCGATG CCCGCCACGA TGCCCTGACT GGCCTGTATA ACCGCAGCGC CATCATAGAG
TATCTGGGCA AGAGCATCAG CCGCAGCCGA CGTCAAAAGG CGCAGCTGGC GGTGAGCTTT
ATCGACGTGA ACGATCTGAA GAAGACTAAT GATCTGCACG GTCATGAGGC GGGGGACGAT
CTGCTCAAGG GCGTGGCTAG CGTGATCAAC ATGTCGATCC GCGACGGTGA CTTTGCTGCC
CGCATCGGCG GCGATGAGTT TCTCATCGTC TTCGTGGACT GCGACGGCAG CTGCGCCAGC
GAGATCATGG AGCGGATCCA GGCCGCCTAT GGCGTCATGG GGCTTGGCAA GACGGGTAAG
GAGTGGAGCC TGAGCTTCGG CTGCACCCAG CTGCTGCATG AGACCGACGA TGTGGACAGC
ATCATAGAGC GGGCCGACAG CCTGATGTAT GAACACAAGA CGGGGCAGAA GAACCAGCTG
CTGCCTTAA
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| Protein sequence | MDRDAPQEAK LTYAKYKKSM LYSLLLLLFL SAVLSIVYLM TSSNISRERE MRQYAELGNM
QASLLTELNI VGTDLAYYAH SELAVSTLED KDPKAKRYLT SLMFQIGNLY KHYDQIRLLD
DRGDEVIRID QLRDNSLQLV PDEALQNKAD RYYFRELAGL KPEEIYASPF DLNVEHGEVE
QPLKPTIRFA TPIYSMAGDF IGAGVINYKG KDLLQIIDDL NVHEGDRVYL LNHKGFYLKG
DQPDKEWRFM FPEREQLGFD SDYPTAWRRM QQSELGKVVT DDGEYYFSRF KLAPHSLFNI
VNRESAYLVM FVPESTIEAA QQNLTNSALI AFLLVSPMFI FLAYKLAGAQ VEQQRLFSQL
TFDARHDALT GLYNRSAIIE YLGKSISRSR RQKAQLAVSF IDVNDLKKTN DLHGHEAGDD
LLKGVASVIN MSIRDGDFAA RIGGDEFLIV FVDCDGSCAS EIMERIQAAY GVMGLGKTGK
EWSLSFGCTQ LLHETDDVDS IIERADSLMY EHKTGQKNQL LP
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