| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3007 |
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| Symbol | |
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| ID | 4923412 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3570632 |
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| End bp | 3571525 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164617 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095132 |
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| Protein GI | 127513935 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGTA GCGTAGGCAC AGAACTTGAG CTTATCCATC TGTTTGTGCA TCTGGTGAAT
ACCGGCGGTT TTTCCCAGGT GGCCAAAGAG CTGGGTATGC CCGTGGCGAC CGTTAGCCGC
AAGGTGACTA AGCTGGAAAG CCTGCTGGAT ACACAGCTGA TCATGCGCAG CACCCGTAAG
CTGAGGTTAA CAGAGGAGGG CAGCGAGCTC TTTGGCCGCT ACCAGAATGT GGTGGCCCAG
TTTGACCGCT GCAGCGAGCC CAGAGTCGAG AAGGCCGAAG GCACCCTGCG TATTGCGGCG
CCCGTGTCTA TCATCTCGAT GATCTTCATC GGGGTGCTAA ACGACTTCTC TAAGGCCTAC
CCGGATATTC AGCTGCATAT CACCCAGAAT AATTCCAGTA TCGATCTGAT CGACGAAGGG
GTGGACGTGG CCATCGTCGG CGGCGCCCAG CCCGACTCCT CCTGGGTCTC TAAGTCGCTG
GGGGTCTTGG ATTATGGCCT GTTCGCCTCG CCGGGCTACC TTGCCTGCGC CGGTACGCCG
CAACATCCGG ATCAGCTGGT GGAGCACTCC TTGATCAAGG TGTGGCCTTT GTTTAACTGG
TCGATGAAGC ATGTCAGCGG CGAAGATTTC TATTACGAAG GCCCGGCTAA GTTGACCCTT
GGGGATCTCA ACGGTGCGGT GCGCGCCACG GTAGACGATG GCGGTATTCT CTACGGCCCA
GAGCTGTTCG TGAAGGGGGA GCTTGCTTCG GGTGAGCTGC GCCGGGTGCT GCCCGACTGG
CACGGCGAGC AACGACGTAT CTCCCTGCTG TACCATCAGC GCACCCATCA GCCGCTCAAG
GTGAAGCTGT TTATCGAATT TATGCAGGAC AGAGCCAGCT GTTTGTTCCA TTAA
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| Protein sequence | MARSVGTELE LIHLFVHLVN TGGFSQVAKE LGMPVATVSR KVTKLESLLD TQLIMRSTRK
LRLTEEGSEL FGRYQNVVAQ FDRCSEPRVE KAEGTLRIAA PVSIISMIFI GVLNDFSKAY
PDIQLHITQN NSSIDLIDEG VDVAIVGGAQ PDSSWVSKSL GVLDYGLFAS PGYLACAGTP
QHPDQLVEHS LIKVWPLFNW SMKHVSGEDF YYEGPAKLTL GDLNGAVRAT VDDGGILYGP
ELFVKGELAS GELRRVLPDW HGEQRRISLL YHQRTHQPLK VKLFIEFMQD RASCLFH
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