| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_3001 |
|---|
| Symbol | |
|---|
| ID | 4923406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3561763 |
|---|
| End bp | 3563940 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640164611 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001095126 |
|---|
| Protein GI | 127513929 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
[COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.620966 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCTCG TGCTAAAGAA ACTGCTCGCC ATGACCAGCT CGACCCAGAT GCTCGTCGCC
ATGTTTGTCG GTTTTGCCGT GGGGCTCTTT TTCGGTGAAT CCGTCGGCTG GATGAGCAGC
ATAGGCACCA GCGTGATCCT CTTGATGCAG ATGACGGTAT TGCCCTATAT TCTGGTCTCC
TTGGTGGGGG GCATAGGTAA ACTCAAGCGC GCCACCGCCA GCCTGATCTT CAGCCGCGCC
GGCGTCATCA TGCTACTACT CTGGGCTGTT GGCCTACTAC TGGTCGCCCT GATGCCACTC
TCCTTCCCCT TTGTCGAGAC CGCTTCCTTC TTCAGCACCA GCTCCATCGA GCCCGCCACG
GCCATCGACT ATTTCAAGCT CTATATTCCC TCTAACCCCT TCCAGTCGAT GGCCGAGGGT
TATGTACCCG CCATGGTGAT CTTCGCCATC GCCATGGGGC TGGCACTGAT TGGCATGGAG
GGCGACAACA AGCAGCTGAT CATTAACTTC ATGCACACCT GCAGCGAGAT ATTCTCCAAG
ATCACCCAGG CGCTGGTGAA GGTACTGCCT ATAGGGATCT TCGCCATGTC GGCCTCGGCC
GCTGGCACCA TGGGAGTGGA TGAGTTTGCC AGCATGCAAG TCTATCTCAT CAGCTACTTC
GTCCTCTGCC TGCTGCTCAC CTTCTGGGTA CTGCCCTGGA TAGTCGCCTC CCTGACGCCG
GTCACCTTCG CCCAGGCGCT AAGGATCAGC AAGTCCAGCC TGGTTACCGC CTTTGCCACC
GGCAACATCT TCATCGTCAT CCCGGTGATC GTCGAGGAGT GTAAGCAGAT CATGCGCGAG
CATCAGAGCC TGAGCGACGA TGCCGAAACC CTGGTGGAGA TCTTGGTGCC CATCGCCTTC
ACCTTCCCCA ACATAGGCAA GCTGACGGTG ATCCTCTTCG TGCTCTTCGC CGGTTGGTTT
AACGGCACGC CGATAGAGCT CAGCGCCTTG CCGTCGCTCT CCATCAGCGG CGTCTTGTCG
CTGTTTGGCA GCGTCTATGT GGCGATCCCC TTCATGCTGG ACCTGGTGCA TCTGCCCCAA
GATCTATTCC AGCTGTTTGT GATGTCAGGC TTTATCACGG GCAAGTTTAA CTCCATCACC
GCCGTGATGA ACCTGTTTGC CCTGACACTG TTGACGGTGG CGCTATTTGA GAAGCGTCTA
AGACTCAGGC CGCCGCAACT GCTCAAGATG GCCATAGGCG TGGGGGCCAG CGTGGTGCTC
ACCCTCATCG TCTGCCGGGT GGGCATGGGG CTGTTTATTC ATAGCCCAGA GGTGACCAGC
GGCGTTATCG CCAACATGCA GGTGGCCGAC AAGGTGCCGA CCAAGGTGAG CAAGCAATAT
CCGGTATTGG GTCAGAGCGC CAGTCGCCCT ATCGCCGATG TCAACGCCAT CCGCGCCCGC
GGCCTGCTGA GGGTCGGTTA TATCCCCAGT AATGTGCCCT TTAGCTACTA CAACAACGCC
GGGCAACTGG TGGGCTTCGA CAGCGCCATG GCCAATCGTC TGGCGGACGA TCTTGGGGTA
AAAGTCGAGT TTATCCCCTT CGAGAAGGAT AAGCTGGCCG CCTCCCTCGA CGCGGGCTTC
TTCGATATCG CCATGTCGGG TCTGGCGATG GATATCGAGC AGATGGACAA GCTGAACTAT
GTGGAGCCCG TGCTGCTGCT TAACCTTGCC ATCGCTACCA AAGACCATAA GGTCAACAGC
TTCAAGCGCA ACCAGTCAAT CAAGGCGATG CAAGATACCA CCATCGCCTA CGTGGAGCAC
AGCGACATCA TAGAAGATGC CAAGGCCTTC TACCCCAACC TCAAGTTCGT CAAGATTAAG
GGCTACAAGG ACTTCTTCCG TCAGAAGGGC GACAAGTATG ACGCCTTGGT GATCAGCGCC
GAGGCGGGCT CTGCCTGGAC CCTATTCTTC CCCGGCTATG GCATAGCGCC GCTGGAGTAC
AAGGCGAAGT ACCCTATCGC CTATGCGGTC GCCCAGGACA ACCAGTCGCT GCTCAACTAT
GTCAACAACT GGCAGAAGCT GCGCAAGGTG GATGGCCACC AAGAGCGGCT CTACAACTAC
TGGATGCTAG GCCAAGGCGC CAGCGAGCCT AAACCCAGGT GGTCCATCAT ACGCGACGTT
CTGCACTGGG TAGATTAA
|
|---|
| Protein sequence | MTLVLKKLLA MTSSTQMLVA MFVGFAVGLF FGESVGWMSS IGTSVILLMQ MTVLPYILVS
LVGGIGKLKR ATASLIFSRA GVIMLLLWAV GLLLVALMPL SFPFVETASF FSTSSIEPAT
AIDYFKLYIP SNPFQSMAEG YVPAMVIFAI AMGLALIGME GDNKQLIINF MHTCSEIFSK
ITQALVKVLP IGIFAMSASA AGTMGVDEFA SMQVYLISYF VLCLLLTFWV LPWIVASLTP
VTFAQALRIS KSSLVTAFAT GNIFIVIPVI VEECKQIMRE HQSLSDDAET LVEILVPIAF
TFPNIGKLTV ILFVLFAGWF NGTPIELSAL PSLSISGVLS LFGSVYVAIP FMLDLVHLPQ
DLFQLFVMSG FITGKFNSIT AVMNLFALTL LTVALFEKRL RLRPPQLLKM AIGVGASVVL
TLIVCRVGMG LFIHSPEVTS GVIANMQVAD KVPTKVSKQY PVLGQSASRP IADVNAIRAR
GLLRVGYIPS NVPFSYYNNA GQLVGFDSAM ANRLADDLGV KVEFIPFEKD KLAASLDAGF
FDIAMSGLAM DIEQMDKLNY VEPVLLLNLA IATKDHKVNS FKRNQSIKAM QDTTIAYVEH
SDIIEDAKAF YPNLKFVKIK GYKDFFRQKG DKYDALVISA EAGSAWTLFF PGYGIAPLEY
KAKYPIAYAV AQDNQSLLNY VNNWQKLRKV DGHQERLYNY WMLGQGASEP KPRWSIIRDV
LHWVD
|
|---|
| |