| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2985 |
|---|
| Symbol | |
|---|
| ID | 4923786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3542173 |
|---|
| End bp | 3543687 |
|---|
| Gene Length | 1515 bp |
|---|
| Protein Length | 504 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 640164595 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001095110 |
|---|
| Protein GI | 127513913 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGTCG TTATTTTCTC GGTAATCTTA GCCCTACTCT TTATCAGCCT GCTGCTGGTC
TACCTAAACT GGCGCAGCAA ACAGCCCATC GAAGTCACCG GCGGCCCGGA TGAGGTCATT
TTTCTCGCCA ACCAACTGCT GCACAGCGGT CGGGAAGCCC AGGCCCTCGA TTATCTGGAG
CGCGCTGCCG CCATGGGGAT GGCCCACGCG GCGCAGTTCC TGGGTGAACT CTACAGCCTC
GACGATCATC ATCTGTATGA TTTAGACAAG GCCAATCATT GGTTTCAACA AGCGGGCGAG
CTGGATGAGC AATTTGCCCA GATTCAACGC CAGATGCTCA AGTTGAAGCT TCATCCAAGC
CAAAAAGGTG GCAGTCACGA ACTGGAAGCC ATGCTGAAAC CTGGCGCCGA TCAGGGCAAC
AGCCAGCATC AAGGCGAACT GGGCAGACTC TATCAGGAGA GCCCACTGCT CGACCCCGAC
GGCAGCAAGG CGCTGCACTA TCTCGAGCTT GCGGCCGAGG CGGGTGATGC TGAAGCGCAA
TATCATCTGG CCAAGGTGTT GCTGGAACCG CGCCATGGCG AACCGGATCC CATCAGGGCC
AGAGCCCTGC TCACGGCCAT TGCCGACAGC GATCCTCTGG CCAAGAGCCA ACTGGCGCAG
ATGCTGCTTA GGGGAGAAGG CGGCCCGGCC GACCCCCGTG AGGCCGAGCG CCTGATGCGC
GAGGAAGCAG AGGACAACGA GTTTGCCCTC ATCGAGCTGG CGCACCTCTA TCAGGAAGGT
AAACATCTGC CTAAGGATAT CGATAAGGCA GAGGAGTGCC TAAGACAGGC GATGGCCATG
GAAAACAATA GCGCCACCTA CCTGTTGGGG GAGCTACTGC TCAAACATAA ACGCGCCAAC
GACAGTCACC TTGAGGCGAT CACCCTGCTC ACGCCATTGG CCCAGCAGTG GATGACAGAC
GCCCTCTTCC TTTTGGGTCA GGCTCACGAA GAGGGACTTG GCACCCGTCG ACATCTCCCC
ACGGCCCTGG CTTACTATCG TTTGGCGGCG ATCGATCCCG CGCCCTATCA TCTTGAGCGG
GTCGAGACAT TAAGCGCCAA GATGGGCAGC TATGAGAAGG AGCAGGCCGA GAGCCTGTAT
CAAGCATTTC TCACCGAGCA CCCCATAGAG AAGTCCCAGC AGGCCTGCAT AGATCTGACC
CACGGCCTGC GTCTGCTCCA TGAAGACGAT AAAGGTAAAC GCCATCCGAG AGAGGCTATT
AGCTTTCTGG AGCGCGCCGC ACTCGCCGGC GAGAACCTGG CATTTAAGCC GTTGCATAAA
GCCTGCGCCG AGCTGAGCCA GAGGGTTGAT GCCGCCGTCT GGGCACAGAT CGCCCTGGAA
GATCAGTTCT ATTTTCTGCC CACGGGCGAG ATGGAGAGCA GCTTAGCCAG CCTCAAGCAA
GGCTTTAGCG AGTCAGAGCA GGCGCTGTTT GAGCAGCGCT TACAAGAACG GCGAGAGGCA
CTCACAGGTC ACTAG
|
|---|
| Protein sequence | MQVVIFSVIL ALLFISLLLV YLNWRSKQPI EVTGGPDEVI FLANQLLHSG REAQALDYLE
RAAAMGMAHA AQFLGELYSL DDHHLYDLDK ANHWFQQAGE LDEQFAQIQR QMLKLKLHPS
QKGGSHELEA MLKPGADQGN SQHQGELGRL YQESPLLDPD GSKALHYLEL AAEAGDAEAQ
YHLAKVLLEP RHGEPDPIRA RALLTAIADS DPLAKSQLAQ MLLRGEGGPA DPREAERLMR
EEAEDNEFAL IELAHLYQEG KHLPKDIDKA EECLRQAMAM ENNSATYLLG ELLLKHKRAN
DSHLEAITLL TPLAQQWMTD ALFLLGQAHE EGLGTRRHLP TALAYYRLAA IDPAPYHLER
VETLSAKMGS YEKEQAESLY QAFLTEHPIE KSQQACIDLT HGLRLLHEDD KGKRHPREAI
SFLERAALAG ENLAFKPLHK ACAELSQRVD AAVWAQIALE DQFYFLPTGE MESSLASLKQ
GFSESEQALF EQRLQERREA LTGH
|
|---|
| |