| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2960 |
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| Symbol | |
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| ID | 4924054 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3508399 |
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| End bp | 3513378 |
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| Gene Length | 4980 bp |
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| Protein Length | 1659 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164570 |
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| Product | peptidase S8/S53 subtilisin kexin sedolisin |
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| Protein accession | YP_001095085 |
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| Protein GI | 127513888 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR03501] gammaproteobacterial enzyme C-terminal transmembrane domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.929351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTGA AAAAAATAAG TCTCATGACG ATAGCGGCCA TCTATGCCGC CGGCGTTGGC
GGCGCCGCCG CGTCGAGTAA TGCTGATACG CATAACATGC GCAGCATAGA GATCACCGAC
GCCATCCTGA AATACAATGA GGACCTGCGC GCCGGTAAAC AGCGCAACGG TATCCAGAGT
AGTGAATCGC TGCAACAACG TGGCAGCAAC GGCAAGAACG TACACCGCGC AATTGCCACT
CAGCAAAACA GCAAGGTGCC GTTCAAATTT GAGGCCGGCC TAACAGGCGA GCAGACCTAT
ATCGTCGAGC TCAGCGACAA GCCGGTTTCA CTCTATCGCG GCGACCTGCC TAACCTGGCG
GCCACCTCAC CTAAGATGAG CACTGTCCCC GTGATGCTCA ATGCACGAGG CCACAACAAG
GTCGATATGA GTAGTCGTGC GGTGAAGCAA TACACCAACT ACCTCGCCGA CAAACAGACT
CAGGTACTGT CTCAGATCAG TGCCACAGTA GGTGGTAATG TCGAGGTGAA GCAACGATAT
AGCCTGGCCT TTAACGGCAT GGCAATGCGC ATGACCCAAG ATCAAGCCGC TCGTGTGGCT
GCACTGCCAG GCATTCGCAA TGTCAGCCTG GAAAAAATGT ATGAGTTGCA CACAGACGTG
GGACCTAAAC ATATCGGCGC CGATGGCATG TGGATGGGCA CGGCAGCAGA CGATAAGTAT
AAGGGCGAAG GCATAGTGGT CGGCGTACTG GATACGGGGA TCAACACAGA TCATCCATCG
TTCGCCGCCG TCGCCGGTGA TGGCTACGTG CACCAGATGC CTGCACGTTA CAGTCACTAT
CTAGGTGACT GTGAAAAGGC CGAATTTGCC AGCATGTGTA ACGATAAGCT AATCGGGGTA
CGCTCGTACG AGGCGATCAC AGATAGCTAT CTCGATCCTA TCTTCCAGCC AGATATCCCA
AGTTGGCAGG TCGAGGATCC TAAGCGTCCT CAAAACGGTG AAGACTACAA CGGCCATGGC
TCACACACCT CCTCGACCGC AGCGGGTAAC GAGCTTTCAG ATGTCGACTA TGTGGTAGCT
TCACTTGGCG AAACCGGCGA CGGTATTCCT ACTGGACTCA AATTCAGCAA GATCTCAGGC
GTCGCGCCTC GTGCCAACGT CATCATGTAT CAGGTCTGTT ATCCGGGTGA TGGCAGCTTT
GGCGACAGCT ATGCTGGTTG TAAGGGCTCT GCCTTGCTTG CAGCTATCGA TGATGCCATC
GCCGATGGCG TGGATGTGAT CAACTACTCT ATCGGGACTA CCTTCGGCAC ATTCCCGTGG
GACGATCCTA TGGAGCTGGG CTTCCTGGCC GCCCGTGAAG CAGGCATCTC AGTGTCGGCC
TCTGCGGGTA ACTCCTACAT GCCACAGTAT GCCTCTCAGG CACGCGGCGC CATCGATCAC
TTCTCGCCTT GGCTCACCTC GGTAGCGGCC ACCACGCATG GCCGTGTTAT TGCCGTCGAG
GGTAAGATGC TGACCAATGC CACGGGCGGC GATCAGCCAC TTAGCAACCT GGAAGGCTCG
GGGATCACCG AAGCTTACAC AGGCCCAGTT GTCGAGGCCA AGGCCTATGG CAGCGAGTAT
GAGATGTGTA ACGAGCCCTT CCCAGCCGGT TTCTTTGATG CCGACCCAGA AGGCAATCCC
TATGCCACCG CACCAATCGT CGTCTGTAAG CGCGGCGATA TCGCCCGTGT AAGCAAGGCA
GTAAATGTTC AGGCCGGTGG CGCTGGCGGC TTTATCCTGT GGAACCCAGG ATATTCAGAT
CCGACCCATA ACGACCCTTA CGTCATCCCT GGCATCAACA TCGACTATGG CAGCTACTAT
GGCAACAGCG ATAACGGTTA TTACGGCCTG CAAAGCTGGC TCGCCGCAGG TAGCGGTCAC
ACCCTGACCA TCACCGCATC TGAGGTCAGC ACTAAAGAAG GTACCGCCGA CTATGTTGCC
GACTTCTCGT CTCGCGGCCC CAACCTGGAA GCGCCAGATG TAATGTCACC TAACCTTGCC
GCTCCAGGTG TGAATATTTA CGCCGCTTGG GCCGATGAGA TGCCATTCAC CACCCAAGGC
ATGCCTGCCG ACTACGCTGC CATCAGCGGT ACCTCTATGG CAGCCCCACA CGTTGCCGGT
GCCATGGCGC TGCTGACTCA GGCGCATCCT GACTGGACAC CTGCGCAGAT CCAATCGGCG
CTGATGACCA CTGCATCACT GGAAGGCGTC ACACGCGCTC GTGACGGTAA TCCTTACGAC
CCAGTCGCGG CGGGCTTCAG CGACGCGGGT AGCGGGGTGA TCAACGTATC ACGCGCCAAC
AACGCTCCAC TGCTTCTGGA TGAAAGCGTC GACAACTATC GCGCCGCCAA CCCTAAGAAT
GGTGGCAACA TTCACACCCT GAACCTGCCT TACTTCTATC ACGATAGCTG TGCTGGCACC
TGTACCTGGA TGCGTACGGT AACCGCAACC CAAGACGGTA CCTGGACGGT TGAGGCAACG
CCTAACGAGA TGGAAGGCGC ACAGATGCTG GAACTTGAGG TATCGCCTAA GACCTTTACC
CTCAAGGCCG GAGAGTCTCA GGCAATCAGC CTCAAGGCTA AGATCCTCGA AGTCGAAGCC
ATTGGCGCCG ACTCTTCGCA GATCCAGCTG ACAGGTAGCG TTAAGCTGAC GCCGAGCGAC
AGCAGCAAGC CGATGCAGCA TCTGCCGGTT GGGGTCCGCT ATAAGGGCGA CACCTTGCCT
AACGAGGTCT CTGGCATCAT ACATCGCCAA CAGGGCCACA ACCTGACACC AGAGCTCCAT
ACCAAAGAGG TACAATCGCT AAACTCACGT GTCTATGGCC TCACCAAAGG TGAGCGTCAC
GACGCCGAGC TTAAGCGCGC CGACGTCAGA CTCTACTCAG ACGGCTACAC ACGCCAAGAG
ATTGAGGATG GCGGCGCCAA GGTTATCTTC TTCGATGTGC CCGAAGGCAC CAAGCGCGTC
GTGTGGGAAG TCCTTTCGGC ACCGAAACAC GCCTATACCT CGATAGACTT AGGTATGGAT
GTAAACGGTG ACGAGGATAT CCAATGGTTA GACGAAGCCA TCTGTTTCTC ACAGACAGAC
AATGGTGACT TCTGCGCCAT CAATAACCCT ATGCCGGGTC GCTATTGGGC CATCGCCGCC
AACTGGAAAT GGGAGTATGA GGACGAGAAG AACCTAGCCG ATCCATTCGA GCTAAGCCTT
GCCGTGGTAG GCGACGCTGA TACTGGCAAC CTGACCGTCG AAGGGCCTGC TACCAATGAC
GGCATGACTC CATATCAACT GAAGCTCAAC TACAATCTGC CTGGCGCAGA GGAAGGTGAT
GTCTACTACG GCATGGTCGG TTTGGGAAGT GATGAGTATA ACGACACTAA CCTAGGTGAC
TTTGCGGTCA AGCTAATGCA CATGGGCAGT GACACCAATA TCAGCGCCTC GCAAACGGCA
GCCAAAGAGG GTGACATCCT AGATTTCGTC GTCGAACTGG CGCCTAACCT GCTTGGTGGT
GAGCGTGCGT TTACCTTCAA CACTCAGCTG AGCGAAGGCT TGGTACTGAT GCCAGACTCT
ATCTCTGTGG GCGGTATAGG CAACTATAGC GAAGGCATGA CGGTCGAAGG CAACAGCATA
GCAATCGCGG CGGCGCAGCC ATCTTCGAGC GAGATGAAAC GCCACTATGT ATTTACCACC
AACCTCACAG ATGAGACCTG TCGAGTGCCC TATGGGGAAG ATGGCAGCTT CTACGATCTG
CCTTCTCAAG GATCTCAGCC CATAGGTCTG TCTGGAAGAT CGAATCAGAC ACTATTGATC
CCACTCAGTG CCAACGGCTT ACCCCATGTG CCACTGTATG GTAACCCTGA AGTGTTTGGA
CAGGACGTGT TAGCCATCTC GCCATTCGGC TATGTGCAGT TTGACCCAAT GCCAGACTTC
TGGAACTACA ACCTGGAATT TAACGATATC TTCCAGGGCT TCCCAGACAC TATGGTGGCA
CCACTATGGC GCGGCGATGT GAGAATGCCG CAGACCATGT TCAACTGGAA TACGGGTCGC
TATGAGCATG CTGTTTATGC GGTGATCACC AATAAGCACT ACATCTTCCA GTGGGATGGT
GGTGAGGAGT GGAACTCCTT CCTCAGCGGT AACGATACGC CTGATCCGGA TGCTAAGTTC
AACATTCAGA CTATCGTCGC AACTGACATC AGCTTCGATG AGGCAAGCCC CGAGATCATC
TTCGCCTATG AAACCTTAGA CACAAAGAAC GATCAGTTCG GTTCTGTCGG TCTACACGGT
TACTGGGGTG AGCGCGCCAC CTTCGGCCCT GCAGGAGGTT GGCTGAACGA TGGCTTTGCC
TATAAGGATG TCGATGAGAA GATCAGCTCA GGCACTGTTG TCTGCGCCGA TTATCGCGGC
CCAGAGCAGT CAAAGGTATC ACTCAAGTTC TCGGCGCGTG TGTCGGCAAA TGCCGTCGGC
GCTAGCAACT ATGTGAAAGT CGATACTCAG TATGCAGACT CAGAGTTGGT GACGGTAACC
CATGAGGTCT CTAGCCCATC GAATATCAGC GTGGCAGCCA TTGCCGACAT GATGATGGAA
GAGAACACCA CGCTGGAAGG CATCACTGTT ACCTACAACG ATGTTAAAGG CACAGCCAAC
GGCATCATGG TATCGGGTGA GCACATCACG GCAACTGTGG ATGGCAACAG CTTCAGTATC
ACACCTGATG CCGACTGGTA TGGTGAGACC CTGGTAACGG TAACCGTACA CGATATGGCC
TACCCATCTG ACGCCGCGTC CACCAGCTTC ATGCTGACGG TGAACTCAGA CGGTGTTGAG
CCAACGCCTC CGGCGCCAGA AACCCCAGAT CAGGGCGGTG ACTCTGACTC GGGCGGTAGC
CTTGGCTTCC TAGCTCTAGG CCTACTGGGT CTAATCGCCG GACGCCGTAA GCTGCACTAA
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| Protein sequence | MKLKKISLMT IAAIYAAGVG GAAASSNADT HNMRSIEITD AILKYNEDLR AGKQRNGIQS
SESLQQRGSN GKNVHRAIAT QQNSKVPFKF EAGLTGEQTY IVELSDKPVS LYRGDLPNLA
ATSPKMSTVP VMLNARGHNK VDMSSRAVKQ YTNYLADKQT QVLSQISATV GGNVEVKQRY
SLAFNGMAMR MTQDQAARVA ALPGIRNVSL EKMYELHTDV GPKHIGADGM WMGTAADDKY
KGEGIVVGVL DTGINTDHPS FAAVAGDGYV HQMPARYSHY LGDCEKAEFA SMCNDKLIGV
RSYEAITDSY LDPIFQPDIP SWQVEDPKRP QNGEDYNGHG SHTSSTAAGN ELSDVDYVVA
SLGETGDGIP TGLKFSKISG VAPRANVIMY QVCYPGDGSF GDSYAGCKGS ALLAAIDDAI
ADGVDVINYS IGTTFGTFPW DDPMELGFLA AREAGISVSA SAGNSYMPQY ASQARGAIDH
FSPWLTSVAA TTHGRVIAVE GKMLTNATGG DQPLSNLEGS GITEAYTGPV VEAKAYGSEY
EMCNEPFPAG FFDADPEGNP YATAPIVVCK RGDIARVSKA VNVQAGGAGG FILWNPGYSD
PTHNDPYVIP GINIDYGSYY GNSDNGYYGL QSWLAAGSGH TLTITASEVS TKEGTADYVA
DFSSRGPNLE APDVMSPNLA APGVNIYAAW ADEMPFTTQG MPADYAAISG TSMAAPHVAG
AMALLTQAHP DWTPAQIQSA LMTTASLEGV TRARDGNPYD PVAAGFSDAG SGVINVSRAN
NAPLLLDESV DNYRAANPKN GGNIHTLNLP YFYHDSCAGT CTWMRTVTAT QDGTWTVEAT
PNEMEGAQML ELEVSPKTFT LKAGESQAIS LKAKILEVEA IGADSSQIQL TGSVKLTPSD
SSKPMQHLPV GVRYKGDTLP NEVSGIIHRQ QGHNLTPELH TKEVQSLNSR VYGLTKGERH
DAELKRADVR LYSDGYTRQE IEDGGAKVIF FDVPEGTKRV VWEVLSAPKH AYTSIDLGMD
VNGDEDIQWL DEAICFSQTD NGDFCAINNP MPGRYWAIAA NWKWEYEDEK NLADPFELSL
AVVGDADTGN LTVEGPATND GMTPYQLKLN YNLPGAEEGD VYYGMVGLGS DEYNDTNLGD
FAVKLMHMGS DTNISASQTA AKEGDILDFV VELAPNLLGG ERAFTFNTQL SEGLVLMPDS
ISVGGIGNYS EGMTVEGNSI AIAAAQPSSS EMKRHYVFTT NLTDETCRVP YGEDGSFYDL
PSQGSQPIGL SGRSNQTLLI PLSANGLPHV PLYGNPEVFG QDVLAISPFG YVQFDPMPDF
WNYNLEFNDI FQGFPDTMVA PLWRGDVRMP QTMFNWNTGR YEHAVYAVIT NKHYIFQWDG
GEEWNSFLSG NDTPDPDAKF NIQTIVATDI SFDEASPEII FAYETLDTKN DQFGSVGLHG
YWGERATFGP AGGWLNDGFA YKDVDEKISS GTVVCADYRG PEQSKVSLKF SARVSANAVG
ASNYVKVDTQ YADSELVTVT HEVSSPSNIS VAAIADMMME ENTTLEGITV TYNDVKGTAN
GIMVSGEHIT ATVDGNSFSI TPDADWYGET LVTVTVHDMA YPSDAASTSF MLTVNSDGVE
PTPPAPETPD QGGDSDSGGS LGFLALGLLG LIAGRRKLH
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