| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2897 |
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| Symbol | |
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| ID | 4921826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3435587 |
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| End bp | 3436471 |
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| Gene Length | 885 bp |
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| Protein Length | 294 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164494 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001095022 |
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| Protein GI | 127513825 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000450249 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.952694 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGTCA AAGTATTTAA GACCTTTTTA GAGGTGGCCA GAACCCGGCA TTTCGGCCGT
GCGGCGGAGA ATCTCTATAT CACCCAGGCA GCCGTGAGCG CCCGTATTAA GCAGCTGGAG
TCCTTCTTCG ACTCCGCGCT GTTTGTGCGT AATCGCAACA GCATTCAACT CACCACCTCG
GGTGAGCGTC TGGTGCCCTA CGCCGAGGTG ATGGTGAGCA CCCTGGAGCA GGCGAAGAAC
GAGTTGGCCC TGACCAACCA TAAGGCGTTG CAGCTGACCA TGGCGGGGAC GCCTAACATC
TGGGATGCCT ACCTGCAGCA CTGTTTGAGT AAGGTGACCG ATGCCTTCGG TGGCTATGGC
TTTCTGGCCG AGGCGCTGAG TCGCGAGCAG CTCAACCGCA ACCTGCTGGA GCGAACCCTA
GACATGGCTT TTGCCTTCGA TCCGCTTAAG TCGGAGGAGC TGGTGTGTAA GCAGGTGGCC
GACCTTATCC TGGTGTTGGT CTCGACTCGC CCCTGCGATC AGAGCGAGGC GCTGAGCGAC
AAGTATGTCT ATGTGGATTG GGGCACACGT TTCGCCTCCG AGCACGCCGA GCGCCACTAT
CGCATGCCGC CACCTTATCT GCGTACCTCC ACCGGGCGTA TCGCGCTGGA TTTTATTCTG
GATAAGGCGG GGGCGGCCTA TCTGCCGCTG TCTATCGTCG AGCCGTTCCT GCAATCTAAG
CAACTCTATC TAGTAGAAGG GGTGGAGCCC TGGAATCGTC CCATCTATCT CTCCTACCGC
AAAGACAGCG GGTCGCTGGA GGCGATCATC AAGATTGAGG AGCTGGTCAA GGAGATAGAC
CCTCTGACCG CCTTCAGCCT GCAGCAGATA GGTCAGCTGG GCTGA
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| Protein sequence | MDVKVFKTFL EVARTRHFGR AAENLYITQA AVSARIKQLE SFFDSALFVR NRNSIQLTTS
GERLVPYAEV MVSTLEQAKN ELALTNHKAL QLTMAGTPNI WDAYLQHCLS KVTDAFGGYG
FLAEALSREQ LNRNLLERTL DMAFAFDPLK SEELVCKQVA DLILVLVSTR PCDQSEALSD
KYVYVDWGTR FASEHAERHY RMPPPYLRTS TGRIALDFIL DKAGAAYLPL SIVEPFLQSK
QLYLVEGVEP WNRPIYLSYR KDSGSLEAII KIEELVKEID PLTAFSLQQI GQLG
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