| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2889 |
|---|
| Symbol | |
|---|
| ID | 4921818 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3428466 |
|---|
| End bp | 3429032 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640164486 |
|---|
| Product | uncharacterized lipoprotein |
|---|
| Protein accession | YP_001095014 |
|---|
| Protein GI | 127513817 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3056] Uncharacterized lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAT TTATTCCCAT CATCGCCTGT GCTGGCCTGC TGTTTGGCTG CGCCTCTCAT
ACGCCGACCC ATATGGCGCT CAATCCGCAA CTGCCTGCGA TTGAATCTCA AGGGGTCCCG
GCCAAGCCCA TCGCCATCGA GATGATAGAT ACCCGCTCGG CTAACTTTAT TGCCCGCTTT
AATAATGAAG GGGATGCCGC CAGGCTGGTG AGCCCATCTG AGTCGCCACG CCGCCAGTTA
GAGCAGGTGT TTCGCGACGG CTTTACCAAG GCGGGATATC GCATCGACCC AAGCTCGGTG
AACCATATGC AGCTGCAACT GGAAAAGCTG CTGACCGATG TCAGCGACAC CACCTTTGGC
TATCAGGCGA CCAACGATAT CATTATCAAT GTGATCGCCA GTAACGAAAG CAAGACCTTT
ACCAAGCGTT ATACTGCCCG TAACCTGGTA TCGGGCCCCT TTAGCGCAGA TTTTGCGACC
CTGGAGTTGT CGGTCAACGA TCTGCTCGGC GATCTGACCG CAAAGATAAT CAACGACCCC
GAACTCAACC AGTTCATCCA ACAATAA
|
|---|
| Protein sequence | MKRFIPIIAC AGLLFGCASH TPTHMALNPQ LPAIESQGVP AKPIAIEMID TRSANFIARF
NNEGDAARLV SPSESPRRQL EQVFRDGFTK AGYRIDPSSV NHMQLQLEKL LTDVSDTTFG
YQATNDIIIN VIASNESKTF TKRYTARNLV SGPFSADFAT LELSVNDLLG DLTAKIINDP
ELNQFIQQ
|
|---|
| |