| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2856 |
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| Symbol | |
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| ID | 4922235 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3386915 |
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| End bp | 3387568 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640164453 |
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| Product | ThiJ/PfpI domain-containing protein |
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| Protein accession | YP_001094981 |
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| Protein GI | 127513784 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000216474 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTATAAAG TTGGCATCGT GTTGTTTGAT GACTTTACCG ATGTAGATTT CTTTCTGATG
AATGACTTGC TGGGAAGAAC ATCTGATAGC TGGACAGTCA GGATACTCGG CACTAAACCC
GAACATCATT CGCAGCTAGG GATGACAGTG AAGACTGACG GCCATGTGTC TGAGGTAAAG
GAGCAAGATG TCGTTCTCAT AACCAGTGGT TACCGCGGTA TTCCCGCGGC GCTGCAAGAT
GAGAATTTTA TGTCTGCCTT AAAACTCGAC CCGAGCAGGC AGTTGATTGG CTCTATATGT
GCGGGTTCCT TTGTGCTTCA TGAGCTGGGG TTACTGAAGG GGAAGAAGCT AACGACAAAC
CCTGATGCTA AGGCGGTTCT ACAAGGTATG GGCGGTGATG TTCAGGATCT ACCCCTGGTG
ATAGAGGGGA ATATAGCAAC CGCTGGTGGT TGTCTTTCTC TCCTCTATCT AGTGGGCTGG
TTAGCCGAGC GTCTGTTCGA TTCGGTGAAA CGCAAACAGA TCCAGAATCA GTTGATCCCC
GCAGGGCAAA TGGAGATATT CGAAACGCTT ATTTCCGAGA CTATCCAATC GGCGGAATCC
GCCTATGAGT ATCGCTCAGC GTGTGAGAGT GATGCCGAGT CTTTGGTGGT TTAG
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| Protein sequence | MYKVGIVLFD DFTDVDFFLM NDLLGRTSDS WTVRILGTKP EHHSQLGMTV KTDGHVSEVK
EQDVVLITSG YRGIPAALQD ENFMSALKLD PSRQLIGSIC AGSFVLHELG LLKGKKLTTN
PDAKAVLQGM GGDVQDLPLV IEGNIATAGG CLSLLYLVGW LAERLFDSVK RKQIQNQLIP
AGQMEIFETL ISETIQSAES AYEYRSACES DAESLVV
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