| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2818 |
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| Symbol | |
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| ID | 4922488 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3339664 |
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| End bp | 3340494 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640164413 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_001094943 |
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| Protein GI | 127513746 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000169535 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000498111 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATGTCAG CCGCCGATAA GAGAGGCGGT GACGTCGGCG ATAATCGCCT AACCGTTATC
GACAGTCATG TGCATCTGGA TTTTGGCGAA TTTGATGCTG AGCGTGAGCT GCTTGTCGAG
AGACTCAAGG CCAGTGGCCT TAAAGATGCG GTGATCCCAG GCGTCAGTGC CAGTCAATGG
CCTAAGCTGC AGGCGGTCGC TAGCCGCTAC GGATTTCACT ACAGTCTCGG GGTGCATCCC
TGGTATTGCA CGGCAGATTG GCGGCAAGAT ATTGAAAACT TGTCTAAACT GCTTGATGAG
CGAGGCGGTG ATCCTAAGCT GGTAGCCATC GGCGAATGTG GATTAGATGC CTTACATAAA
GCTTCCTGGG AGGCTCAGCT TCCCTGTTTC GAGGCGCAAC TGCAGTTGGC ACAGCAACAC
GACTTGCCGG TGATTTTGCA TAGCGTCAAG GCCCACAACG AGGTGCTGGC GTTACTCAAG
CGCTACCCAC TAACAAGAGG AGGTGTGATA CATGGCTTTT ATGGCTCGAT GCAGCTGGCT
CAGCGATATG TGGATGCGGG GTATTACCTA GGTATTGGGC ATCTGTTGCT GGAGGAAAAA
GCGAAAAAAT TGCAAGAAAC CCTTGTCAAG TTACCGTTAG AACATCTGGT GATCGAGACT
GATTTAGCCC TGGTTTCCCA GGTGAAAAAG TCGGACTTAG CCGATAAAAC CGGCGGATCC
AGCTTAATTT TGCATTTGCT AATTGAGAAA ATCGCTAAAT TGCAAAAAAA ATCTAACGTT
CTGGTATCAG AACAAGTGTT CCTAAATACA CTGCAACTCT TTGACCTCTA G
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| Protein sequence | MMSAADKRGG DVGDNRLTVI DSHVHLDFGE FDAERELLVE RLKASGLKDA VIPGVSASQW
PKLQAVASRY GFHYSLGVHP WYCTADWRQD IENLSKLLDE RGGDPKLVAI GECGLDALHK
ASWEAQLPCF EAQLQLAQQH DLPVILHSVK AHNEVLALLK RYPLTRGGVI HGFYGSMQLA
QRYVDAGYYL GIGHLLLEEK AKKLQETLVK LPLEHLVIET DLALVSQVKK SDLADKTGGS
SLILHLLIEK IAKLQKKSNV LVSEQVFLNT LQLFDL
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