| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2802 |
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| Symbol | |
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| ID | 4922536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3320273 |
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| End bp | 3321436 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164397 |
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| Product | TMAO reductase system periplasmic protein TorT |
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| Protein accession | YP_001094927 |
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| Protein GI | 127513730 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00470067 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGGTGAAGC ATAATAAATC TCCCTTTTTC CGCGCCTTTT CCCTCTGTGC TTGCCTCCAT
GGGCTGGCAA TCGCCGCCGG TTTTTCCATA TCGGTGACGG CCAATGCTGT TGAGACCTGG
TCACTGGAGC AGCGCACTCC CTATAACGCC AAGCTCCAGC AGGTGAAGAC GCTCAGCTAT
CGCCCCCTGA GTACGGCGAA ACGGCCCTGG CGACTCTGCG CCCTGGTGCC CCACCTCAAA
GATGCCTACT GGATTGGTAT AGACTATGGC CTGGTGACCC GGGCACAAAC TTTGGGGGTC
GCCCTGGAGC TGTTTGAGGC CGGTAGTTAC TATGGCAAGG CGAAGCAGCT AGAGCAGCTG
GAACACTGCA TGAAATCCGA TTTCGACGCC ATCTTGCTGG GCACTGTGGA CCCTGAGCTA
CTGAAACAGT ATCAGGGGCA GATAAGCAAA CCTATGCTGG CCCTGGTCAA CCGCCTCGAC
AGCCCTCTGG TCAGCACCCG CATAGGCGTC AACTGGTATC AGATGGGCTG GCATGCCGGC
GATTTTATTC ATCGCACCAC AGCAAAACAG CCTGGCAAGG CTAACACCGA GCAAGCTAAC
ACCGACCAGA CTAACACCGG CCAGGCTGTG CAACTGGCAC TACTGCTCGG CCCCGAGAAA
CTCGGCGGCA GCACCTGGGT CGAGCAAGGG ATCATGGAGG CGCTTGAGGG CAGCAATGTG
AGCATCTCTT CCAACCGCCA CGCCGATAAC AATCGCGATC TCTATCGGGA TCAGCTACAT
CATCTGCTCA AGGATCACAG GCCAGACTAT ATACTGGGCA GCGCCGTGGC CATCGAGGCC
GCCATAGGCG CCCTGGCGCA GAAGGACACG GCACAAGACA TAGCTTTGGT GAGCAGCTAT
CTGTCGCCCG CCACCCTGCG TGGGCTTTAC CGCCATAGGG TCGCCTTTAG TAGCGACGAT
CAGGTGGTGC TGCAGGGGAA ATTAGCGATA GACGTGGTGG TGCGGGAACT CGAGGGCGCA
GCCCCCTTTG GCGATATCGG CCCCAGGATA AAGGGGCTCA CTCCAGATAA TATTCAGATG
AAGCAGCTGA CCGACAGCCT GGCGCCGGCG GACTTTTACC CCATCTACCG GGTCGAGGCG
CCTAAGGCGA CTCCTCAACC CTAG
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| Protein sequence | MVKHNKSPFF RAFSLCACLH GLAIAAGFSI SVTANAVETW SLEQRTPYNA KLQQVKTLSY
RPLSTAKRPW RLCALVPHLK DAYWIGIDYG LVTRAQTLGV ALELFEAGSY YGKAKQLEQL
EHCMKSDFDA ILLGTVDPEL LKQYQGQISK PMLALVNRLD SPLVSTRIGV NWYQMGWHAG
DFIHRTTAKQ PGKANTEQAN TDQTNTGQAV QLALLLGPEK LGGSTWVEQG IMEALEGSNV
SISSNRHADN NRDLYRDQLH HLLKDHRPDY ILGSAVAIEA AIGALAQKDT AQDIALVSSY
LSPATLRGLY RHRVAFSSDD QVVLQGKLAI DVVVRELEGA APFGDIGPRI KGLTPDNIQM
KQLTDSLAPA DFYPIYRVEA PKATPQP
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