| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2800 |
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| Symbol | |
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| ID | 4922534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3315685 |
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| End bp | 3316911 |
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| Gene Length | 1227 bp |
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| Protein Length | 408 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640164395 |
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| Product | DEAD/DEAH box helicase domain-containing protein |
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| Protein accession | YP_001094925 |
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| Protein GI | 127513728 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0135587 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATTTT CTCAATTGTC TCTGCCTGCG CCACTGCAAC AGGCGCTGGA AGCCTTGGCA
TTTAGCGAGG CGACTCAGAT CCAGGCCGAG GCGATCCCCC TGGTGCTGAG CGGCGTCGAT
CTCATGGCCT CGGCCCAGAC GGGCACGGGC AAGACGGCCG CCTTCGCCCT GCCTATCCTG
GCTAAGCTGA TGGGCCTTGC GCAGGCTGAA GGGTCAGATA AACAGCCCAG AGCCCTGGTG
CTGGTGCCCA CCCGCGAACT GGCGCTGCAG GTTCATCAGG GGATCTCAGA TTTCGCCCGT
TTTACCTCGC TGTCGGCGGG GCTGGTCTAT GGCGGCGTCA GCATAGAGGC CCAGTGCCAG
CAGCTTGCCG CAGGCGTCGA CCTGATCGTC GCCACCCCGG GTCGTCTGCT GGACCTGCAC
AGACGCGGCG CCGCCAAGCT AGATGGCGTG GCGCAACTGG TGTTCGACGA GGCCGATCGC
ATGTTGGATA TGGGCTTTGC CGATGAGATT GCCGAGCTGA TGGCGCTGTT GCCGAGCGAG
CGTCAGACCC TGCTGTTTTC AGCAACCCTG GATGACAAGG TGCTTGCACT GAGTCATCGC
TGGTTAAAGC AGCCCAAACG CATCGCCGTT AGCCCGCAGA ACAGCGCCAG CCAGGATGTC
GAGCAGCGAG TCTATGCGGT GGATAGCGAG CGCAAGTTTG CCCTCCTGTC TCATCTGATC
AACAAGGGGG ATTGGCAGCG GGTATTGGTG TTTAGCCGTA AGAAGGTGGC CGCCGACAAG
CTGGCCGCCC GCTTGTGTGA GCAAGGCATC ATGGCCAAGG CGTTTCACGG GGATCTGGGC
CAGGGCGCAC GCGAGCAGGT GCTGGCCGAT TTCCGCCGTG GAGAGATCAA GGTACTGGTG
GCTACGGATG TGGCGGCGCG GGGGATAGAT ATCGAGTCTC TGGACTATGT GGTCAACTAT
GAGCTGCCCT ATGTGGCCCA GGATTATGTG CATCGCATCG GTCGCACCGG CCGTGCGGGT
AAGCAGGGGG TCGCCGTGAC CCTCTACTGC GAAGAGGATG CCTTGCTGCT GGAGGAGATA
GAGGCGCTGC TGGATAAGCG TCTGCCTCAG CAATGGTTGC CCGGTTTCGA GCCGGATCTC
ACCAAGGCTG ACCCCAATCC CCGTCGCAAT GGCAAGGCGG CGCAGAAACG CCGCGCCAAG
CGGCGCGGTC AGGGTGGTAG ACGCTAG
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| Protein sequence | MLFSQLSLPA PLQQALEALA FSEATQIQAE AIPLVLSGVD LMASAQTGTG KTAAFALPIL
AKLMGLAQAE GSDKQPRALV LVPTRELALQ VHQGISDFAR FTSLSAGLVY GGVSIEAQCQ
QLAAGVDLIV ATPGRLLDLH RRGAAKLDGV AQLVFDEADR MLDMGFADEI AELMALLPSE
RQTLLFSATL DDKVLALSHR WLKQPKRIAV SPQNSASQDV EQRVYAVDSE RKFALLSHLI
NKGDWQRVLV FSRKKVAADK LAARLCEQGI MAKAFHGDLG QGAREQVLAD FRRGEIKVLV
ATDVAARGID IESLDYVVNY ELPYVAQDYV HRIGRTGRAG KQGVAVTLYC EEDALLLEEI
EALLDKRLPQ QWLPGFEPDL TKADPNPRRN GKAAQKRRAK RRGQGGRR
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