| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2798 |
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| Symbol | |
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| ID | 4922532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3312522 |
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| End bp | 3315008 |
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| Gene Length | 2487 bp |
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| Protein Length | 828 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164393 |
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| Product | trimethylamine-N-oxide reductase TorA |
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| Protein accession | YP_001094923 |
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| Protein GI | 127513726 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02164] trimethylamine-N-oxide reductase TorA |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0178103 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGAA GAGATTTTCT AAAAGGCCTC GCCGCCAGCT CCTATGTCAC CCTAAGCGGC
TCATCGCTGT TGGCACCGCT CAACGCCCTG GCCAGCACGG GCACGGATGA AGTGTGGAAA
ACCACGGGCT CCCACTTCGG CGCCTTTAAG ATGACCCGCA AGAACGGCGT CATCGATAAG
GTGATCTCCT TCGACCTGGA TAAATACCCG ACCGATATGA TCAATGGGGT CAAGGGCCTG
GTCTATAACC CATCCCGCGT GCGCTACCCT ATGGTGCGCC TCGACTTCCT GCTCAAGGGG
CACAAGAGCA ATACCTTAGA GCGCGGTGAC TACCGCTTCG TGCGTGTCAC CTGGGACAGG
GCCCTGTCAC TGTTTAAGGA CTCATTAGAT GAGATCCAAA CCAAATACGG CCCGTCAGGG
CTGCATGCGG GCCAAACCGG CTGGCGCGCC ACGGGTCAGC TGCACTCCTC CACCAGCCAT
ATGCAACGCG CGGTAGGAAT GCACGGCAAC TTCGTCAAGA AGGTGGGCGA CTACTCCACC
GGCGCCGGTC AGACGATTCT GCCCTACGTG CTCGGCTCGA CCGAGGTCTA CGCCCAGGGC
ACCTCCTGGC CGCTGATCTT AGAGCACAGC GACACCATAG TGCTCTGGTC AAACGACCCC
TATAAGAACC TGCAGGTGGG CTGGAACGCC GAGACTCACG AGTCTTACGC CTATCTGGCA
CAGCTGAAAG AAAAAGTGGC CCAGGGCAAG ATCCGGGTGA TCAGCATAGA TCCCGTGGTC
ACCAAGACCC AGAAATACCT GGGCTGCGAG CAGCTCTACA TCAACCCACA GACAGACGTG
GCCCTGATGC TGGGTATCGC CCACGAGATG GTGAGCCAGA ATCTGCACGA CAAGGCCTTC
ATCGAAGGCT ACAGCCTGGG CTTCGACGAG TTCCTCCCCT ACCTGCTAGG TGAGAAAGAT
GGCGTGGCCA AGACCCCTGA GTGGGCTAGC CAGATCACAG GCGTGAGTGT CGAGATCATC
AAAGATCTGG CCAAGGTGAT GACTAAGGGC CGCACCCAGA TCATGATGGG CTGGTGCATT
CAGCGTCAGC AGCATGGTGA GCAGCCCTAC TGGATGGCGG CGGTGCTGGC CACCATGATA
GGCCAAATCG GCCTGCCGGG CGGCGGCATC AGCTATGGCC ACCACTACTC CAGCATAGGC
GTACCTTCAT CGGGCGCGGC GGCGCCGGGC GCCTTCCCAC GTAACCTAGA TGAGGGCCAG
AAGCCCCTGT TTGACAGCAG TGACTTCAAG GGGGCCAGTA GCACCATACC AGTCGCACGC
TGGATAGATG CCATCCTTGA GCCGGGCAAG ACCATAGATG CCAACGGCAG CAAAGTCACC
TACCCCGACA TCAAGATGAT GGTGTTCTCG GGCAACAACC CTTGGAACCA TCACCAGGAC
AGAAACAAGA TGAAGCGCGC CTTCCACAAG CTGGAATGTG TAGTCACCAT AGACGTGAAC
TGGACCGCCA CCTGCCGCTT CTCAGACATA GTGTTGCCAG CCTGTACCAC CTTCGAGCGC
AACGACATAG ACGTCTATGG CAGCTATGCC AACCGCGGCG TCCTGGCGAT GCAGAAGATG
GTCGAGCCCC TGTACGAGAG CCTGTCGGAC TTTGAGATCT TCACCCGCTT TGCGGCACTC
ATGGGTAAAG AGAAGCAATA TACCCGCGGC CTGACCGAGA TGGACTGGCT AAGAAAACTC
TACGACGAAT GTAAGGCCGC CAACGCTGGT AAGTTCGAGA TGCCAGATTT CAACACCTTC
TGGCAGCAGG GCTATGTACA CTTCGGTGAA GGAGAGAATT GGACCCGCCA CAGCGATTTT
AGGGACGACC CTGAGATCAA CCCGCTGGGC ACGCCATCAG GCCTTATCGA GATCTTTAGC
CGCAAGATCG CCCAGTTTAA CTACGACGAT TGCCCCGGCC ACCCAAGCTG GATGGAGAAG
AGCGAGCGCA GCCACGGCGG CCCTGGCTCA GACAAGTACC CCATCTGGAT GCAGTCATGC
CACCCGGATC AGCGTCTGCA CTCGCAGATG TGTGAATCCC AGGAGTACCG CGAGACCTAT
ACCGTACAGG GACGCGAGCC TGTCTACCTC AATCCGCTGG ACGCCAAGGC CCGCGGCATC
AAGGATGGCG ATCTGGTACG CGTGTTCAAC GACAGGGGCC AGCTTCTGGC GGGCGCCAGG
GTATCGAACC GCTTCCCTCA GGGCGTGATC CGTATCCACG AGGGAGCCTG GTATGGCCCA
GTGGGCAAGG ATGGTAGCAA GCAAGGCGGC AACGAGATAG GCGCCCTGTG CAGCTACGGC
GACCCCAACA CCCTGACCCA GGATATCGGC AGCTCTAAGC TGGCACAGGC CTGCGCCGCC
TACACCTGTC TGGTGGAGTT CGAGAAGTTC AGCGGTAAGG TCCCAGAAGT CAGCGCCTTC
AGCGGTCCCA TAGAGATCAG CCGCTAA
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| Protein sequence | MNRRDFLKGL AASSYVTLSG SSLLAPLNAL ASTGTDEVWK TTGSHFGAFK MTRKNGVIDK
VISFDLDKYP TDMINGVKGL VYNPSRVRYP MVRLDFLLKG HKSNTLERGD YRFVRVTWDR
ALSLFKDSLD EIQTKYGPSG LHAGQTGWRA TGQLHSSTSH MQRAVGMHGN FVKKVGDYST
GAGQTILPYV LGSTEVYAQG TSWPLILEHS DTIVLWSNDP YKNLQVGWNA ETHESYAYLA
QLKEKVAQGK IRVISIDPVV TKTQKYLGCE QLYINPQTDV ALMLGIAHEM VSQNLHDKAF
IEGYSLGFDE FLPYLLGEKD GVAKTPEWAS QITGVSVEII KDLAKVMTKG RTQIMMGWCI
QRQQHGEQPY WMAAVLATMI GQIGLPGGGI SYGHHYSSIG VPSSGAAAPG AFPRNLDEGQ
KPLFDSSDFK GASSTIPVAR WIDAILEPGK TIDANGSKVT YPDIKMMVFS GNNPWNHHQD
RNKMKRAFHK LECVVTIDVN WTATCRFSDI VLPACTTFER NDIDVYGSYA NRGVLAMQKM
VEPLYESLSD FEIFTRFAAL MGKEKQYTRG LTEMDWLRKL YDECKAANAG KFEMPDFNTF
WQQGYVHFGE GENWTRHSDF RDDPEINPLG TPSGLIEIFS RKIAQFNYDD CPGHPSWMEK
SERSHGGPGS DKYPIWMQSC HPDQRLHSQM CESQEYRETY TVQGREPVYL NPLDAKARGI
KDGDLVRVFN DRGQLLAGAR VSNRFPQGVI RIHEGAWYGP VGKDGSKQGG NEIGALCSYG
DPNTLTQDIG SSKLAQACAA YTCLVEFEKF SGKVPEVSAF SGPIEISR
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