| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2753 |
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| Symbol | |
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| ID | 4922920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 3255170 |
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| End bp | 3257326 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640164348 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001094878 |
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| Protein GI | 127513681 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0197782 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGTAT TTCTCTACAG TCTGCTGCTG TTCTTTTGCT GTGCGACCTC GGTCAATGCA
GCCTTCAGCC AATTGATCAG CAAAGAGGTT AAGTTTAAAG AGTCGGCCCC CGAGTTTTAC
CAAGACGCCA TCGCCAGCCT CTCCTTCCCC ATCGAATTTG CCAGCGAAGT GGAATTCAAC
CACCTCGCCG ATACCCAAGG CTTCAGTAGC CAGGAGCTGG AGCAGCAGCT ACAGTGGCTG
GCCCGTGTCT ACCTGGAGCC GGGCATTGGG GTCGATGACG CCATGGAGAA GGCGCAGCAG
GTGATGACCC AACTTGAGAT CATCGCCGAC ACTCCCTACG ACAGGGCTTA CTTGCTGATG
CTCCAGGGAC GCAAGACAGG CCGAGATAAG CAAGATTACC AGCTGGCGAT CACTTACTAT
CAACAGGCGC TGGCTCAGCT CAAGGCCAGC GAAGATCTGC CGACTCAGCT GCTGCTACAC
AACATTCATT ATCAGCTTGG CGACCTCTAT CGCATCACGC TACAGAAGAA CGCCGCCCTC
ACCCACCTCA ACCAATATCG CGAGCTGGCC TATCAGCTTA GAGACGACTA CCTGATCGCC
AAGGCCGAGT CGACACTGGG GCACTACTAC AGCGGCGATG AGCAATTTGC CAAGGCGCTG
CAACATTATA CCGAGGCGAT CCGCCTGGCC GAGGGACTGG ACAAGCCCTT CCTCAACGCC
ATCTTGTCGC TGCGCCTCGC CCGCGTCTAT CGGGATCTCA AGTCTTGGGA TGAAGCCCTG
ACCTACGCCC ACAAGGCCGC CGATGGTTTT ACCAAGGTGG GTAAAGACAA TTATCTGTCT
AGCGCCATGA CGGTGATCGC CATGGTGTAT GGTGAACAGG AGCGCTGGAA TCAGGCGATC
GATTACTACC TCAATGCCCA GCAGATAGAT GTCAGACGCG GTAACCTGAC CGCCCAGGCC
CTTAACCTGC ACAACCTGGG CGAAGCCTAT TTCAACAACA AGGAACCCAA GCGCGCCCTG
ACTAACCTTA TCAAGGCTAA CGGTTTGTTC CTGCAGAAGA AGAGCAAGCA CTACCTGATC
TATAACGATC TGCTGATCGC CCAAGTAGCC AGCCAACTCG GCGACTGGAG CATGGTCAAC
GCCTATGCCG CCAAGGCCTT CGTATTGGCC CGGGAGAAGA AACTGCCGGA GCAGATGTTT
GAGGCGCTGC AATATAAGAC CCGCGCCCTG AAGGAACTGG GCGACATCGA CAAGGCCCTA
GCGGCGCTGG AACAGCTTAT CGCCCTGAGT CAGGACCTCG AACACGAGAG CCAGAAGCCC
TCAGACTATA GCCCGAGTGT GTTGGCCGAG CAGCAGCTTA AGCTGCAGCT CAGTCAGCTG
CAGGCATCAA ACAAGACACA AGAGAAGCAG GCCCATCAGT TCAGGCTGGC CGCCAGCATC
ATCTTTATCG TGAGTATGCT GCTGGCACTG GCCGGCATCA ACCAGTGGCG CGGTAAGAGT
AAGTTGAAAA GGCAACTGGC AAGCCTAAAA CAGAAAGTAA ATCAGGAACC CATTACCCAG
CTGCCTGGCT ATCACGGTTT CATCGCCCGC ATGCGACAGA AAAATGAGAT TGCCCAGCTG
GCGCTGCTCT CTCTCGATGA CGGCCACACG CTGGATCTCA ACCTGGGCAA CGATACCTAT
CTCGAGGCCA CCGCGCGTCT GATGGACACC CTGAGTCGAG GCCTAGCCGG AGAGGCTTAT
CTTATTCGTC CGGGCCTCAT CCTGCTGACG CTTAACGAGG TAAACGCCCA TCAAGCACTG
CAGGAGCGGA TCCGCAGCTT GCTCGATGAC CAGCCACAGA GTCAGGGCAC TCATTTCAAG
CTGGGCTGCA TCAAGGTGCC GCTACTTGGT AATCCGGACA TCAAGGTGAC GCCGGATACT
TACTTCAATG TGCTGCAGAT GTTGGTGGCA GGCGCCATGA GTCTGGGGAC GCAAAAAGAT
TGTTATGTCA GTATCACACC ACTGAATTTT GCACCGGCAG CAATTTTGTC TAACCCGCTA
TACTTACACT TGGAAAAAGG GATCAGCCGA GGATTGGTAA AGGTCGAATG TAATGAGAAT
AAGGCACTCA TCCAATGGCC CAAATGGCAG GGAGCAAACG ATGCAGACCC CACATAA
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| Protein sequence | MRVFLYSLLL FFCCATSVNA AFSQLISKEV KFKESAPEFY QDAIASLSFP IEFASEVEFN
HLADTQGFSS QELEQQLQWL ARVYLEPGIG VDDAMEKAQQ VMTQLEIIAD TPYDRAYLLM
LQGRKTGRDK QDYQLAITYY QQALAQLKAS EDLPTQLLLH NIHYQLGDLY RITLQKNAAL
THLNQYRELA YQLRDDYLIA KAESTLGHYY SGDEQFAKAL QHYTEAIRLA EGLDKPFLNA
ILSLRLARVY RDLKSWDEAL TYAHKAADGF TKVGKDNYLS SAMTVIAMVY GEQERWNQAI
DYYLNAQQID VRRGNLTAQA LNLHNLGEAY FNNKEPKRAL TNLIKANGLF LQKKSKHYLI
YNDLLIAQVA SQLGDWSMVN AYAAKAFVLA REKKLPEQMF EALQYKTRAL KELGDIDKAL
AALEQLIALS QDLEHESQKP SDYSPSVLAE QQLKLQLSQL QASNKTQEKQ AHQFRLAASI
IFIVSMLLAL AGINQWRGKS KLKRQLASLK QKVNQEPITQ LPGYHGFIAR MRQKNEIAQL
ALLSLDDGHT LDLNLGNDTY LEATARLMDT LSRGLAGEAY LIRPGLILLT LNEVNAHQAL
QERIRSLLDD QPQSQGTHFK LGCIKVPLLG NPDIKVTPDT YFNVLQMLVA GAMSLGTQKD
CYVSITPLNF APAAILSNPL YLHLEKGISR GLVKVECNEN KALIQWPKWQ GANDADPT
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