| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2750 |
|---|
| Symbol | |
|---|
| ID | 4922917 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3250922 |
|---|
| End bp | 3251872 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640164345 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001094875 |
|---|
| Protein GI | 127513678 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000019899 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.00000382336 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACG TTTTTTGTAA AACACTACTC GCTTCTGCGC TAGCAACTGC CACTCTCGCT
TCTGCACACG CTGCAGAGCC ATTGACTGTT TACGGCAAAC TAAACGTAAC GGCTCAATCT
AACGATGTAG ATGGTGATGC AACGACGACT ATTCAGAGCA ACGCTTCTCG TTTTGGCGTG
AAGGGTGCTT TCGAGCTGAG CAGCTCACTT GAAGCTTTCT ACACTGTTGA GTATGAAGTG
GACACAGGTG ATGCGGCTAA GGAAAACTTC TTGGCTCGTA ACCAGTTCGT TGGTTTAAAA
GGTAACTTCG GTGCTTTCTC TGTGGGTCGT AACGACACCA TGCTGAAGCA ATCTCAAGGT
AAAGTTGACC AGTTCAACGA CCTGTCTGGT GACCTGAAGC ACCTGTTCAA AGGTGAAAAC
CGTATCGAGC AGACTGCGAC TTACATGACG CCTTCTTTCA GCGGTTTCAA AGTAGGTGTG
ACTTATGCTG CTGAAGGCGC TAGCTCACAG TATGGCCAAG ACGGTTTCAG CGTTGCCGCT
ATGTACGGTG ATGCTAAGCT GAAGAAGTCT CCTATCTTCG CTTCTATCGC TTACGACTCA
GACGTTAAAG GCTATGAAGT TGTTCGCGCT ACTGTTCAAG GTAAGATCGC TGGCCTGAAG
ATTGGTGGTA TGTACCAGCA GCAGGAAGAG ACTTACAAGA AAGACGGTAC TGCCGTTGTT
GGTGCTGACA GCAAGACAGG TTACCTGGTA AGTGCTGCTT ACACTATCGA TGCCGTAGTA
CTGAAGGCTC AGTACCAAGA CATGGAAGAC AAAGGTGATT CTTGGTCAGT GGGTGGTGAC
TACAAGCTAG GCAAGCCAAC TAAACTGTTT GCCTTCTACA CCAACCGTGA TTTCGAAGGT
GTTGACACTA CCGATAAATT CTTCGGTCTG GGTCTAGAGC ACAAGTTCTA A
|
|---|
| Protein sequence | MMNVFCKTLL ASALATATLA SAHAAEPLTV YGKLNVTAQS NDVDGDATTT IQSNASRFGV
KGAFELSSSL EAFYTVEYEV DTGDAAKENF LARNQFVGLK GNFGAFSVGR NDTMLKQSQG
KVDQFNDLSG DLKHLFKGEN RIEQTATYMT PSFSGFKVGV TYAAEGASSQ YGQDGFSVAA
MYGDAKLKKS PIFASIAYDS DVKGYEVVRA TVQGKIAGLK IGGMYQQQEE TYKKDGTAVV
GADSKTGYLV SAAYTIDAVV LKAQYQDMED KGDSWSVGGD YKLGKPTKLF AFYTNRDFEG
VDTTDKFFGL GLEHKF
|
|---|
| |