| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2737 |
|---|
| Symbol | |
|---|
| ID | 4922933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3234151 |
|---|
| End bp | 3234939 |
|---|
| Gene Length | 789 bp |
|---|
| Protein Length | 262 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640164332 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001094862 |
|---|
| Protein GI | 127513665 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0062511 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000065853 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGACCAGCG ACTTAGACTT TCACCTCTTC TGCCCTAAGG GCGCGCTGTC TGACTTAGTT
CAGGGGATCT GGTCAGTCTC GCGCCCGGCA GAGGCCGATG AGTTGCATGC CTGGCTCCAT
AGCGATGCGG CCAGCGGCCT GCTGATTAAT CTCGGTGCGC CGCTGGGTTA TGACGAGCAG
GAGGTGCCTG CCGGAGTCTA TCTCCTGCCC GTCAACAAGC AGACCACCAG GGTGACGCTG
CCGCCTGGCG CCTTGGCCGT TGGCGTGCGT TTCCTGCCCG GCGCTGGGCG GGCCTGGATG
ATGGAGCGTT TCGCCTTCGA GCAGGGAAGG GAGGCCATTA CGCCGCTCAC TTATCATGCA
GAACTCATGG CCTTGGCGGC ATCGCTGCGC GCATGTCGTG GCCATCGTCA GCGGTTAAGC
CTGACTTATC GTTGGCTGCG AGCCAACCAG ACGCTAAACC AGCCATTGCC ACGAGTGATC
AACGAGGTAT TGCAGGCGCT AGACAGGCCC GATGCCGACA TGACGGCCTT TGAGAATGGG
GTCATGAGTC AGCGCCAGAT AGAGAGGTAT TTTCGCCGTT ATCTCGAGAT GACGCCCAAA
TATTATCAGC GGCTGATGCG GGCGAGGCAG ACCCTGCAGG CCTTGAAACT CTCTCCCCTG
GCGCCCCTTG CCGATATCGC CTTGGAGCTT GGCTTTGCCG ATCAGGCCCA TATGACCCGG
GAGCTGAAAC AGCTGATTAA GATCACCCCC AAGCGTTATC GCCAGTTGCT GACTCAAGGC
GCCGGTTAA
|
|---|
| Protein sequence | MTSDLDFHLF CPKGALSDLV QGIWSVSRPA EADELHAWLH SDAASGLLIN LGAPLGYDEQ
EVPAGVYLLP VNKQTTRVTL PPGALAVGVR FLPGAGRAWM MERFAFEQGR EAITPLTYHA
ELMALAASLR ACRGHRQRLS LTYRWLRANQ TLNQPLPRVI NEVLQALDRP DADMTAFENG
VMSQRQIERY FRRYLEMTPK YYQRLMRARQ TLQALKLSPL APLADIALEL GFADQAHMTR
ELKQLIKITP KRYRQLLTQG AG
|
|---|
| |