| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2716 |
|---|
| Symbol | |
|---|
| ID | 4922946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 3214473 |
|---|
| End bp | 3216041 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640164311 |
|---|
| Product | peptidase S41 |
|---|
| Protein accession | YP_001094841 |
|---|
| Protein GI | 127513644 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0793] Periplasmic protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000585076 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTCAA TCTCAAATGC TCTGTTTACA AGCCTGATCG CATCAGGCCT CTTGCTCACT
GGCTGTAGCG GCGGTGGCAG TGGTAGCGAT ACCTCTGGCA GCGGCGGCTC CATAGGCACG
GGCAGCACGG TGAAATGGGT CGAGGGAGAA TTTACTCCCT ATGCACAATT GGCCAACCAA
TGCGATGCGG GTCTCAAGGA AAAACTGTGG TTACGTTCTT GGAGTAACGA CACCTACCTT
TGGTACAGCG AGATCATAGA TAGGGATCCG GCGCCTTACC AGGTCTTAGA ATATTTCAGC
CTACTGAAAA CCGAAAACCT GTCGGCCACT GGCAACCCTA AAGATCAGTT CCACTTCTCT
ATGCCCACCA GCGAATGGGA ACAGCTCAAT CAATCGGGCG CCTCGGTCGG CTATGGCATG
AGCTTCCATC TCCAGCAGGC CAGCAGCACC GCAGACAGAA AGGTTACCGT GACCTACACA
GAGCCTAGCT CACCGGCCAC CAGCGCCAAT ATCGCCCGCG GCGCCGTCAT CGTCAGCATA
GATGGCGTGA GCGTGAAAGA TGCCAACGAC ATGGCCTCGA TCAATACCCT GAATAACGGC
CTCTTCCCCA GCGACGACGG CCAGGAGACA CGCTTCACTA TCCTAGATCT TGGCGCCAGC
CAGACCCGTG ACGTGGTTCT TACCGCGCAA ACCGTAGTCT CTACCCCAGT GCAGAATACC
AAGGTGCTCG CCAGCCCTTC GGGTAACGTG GGTTACTTCC AATTTAACTC CCATATCGCT
ACGGCAGAGC GCGGCCTCTA TGATGCCATC GCCACGCTGG CCAATGCCAA GGTAGACGAT
CTGGTACTGG ATCTGCGCTA CAACGGCGGC GGCTTACTGG CCATGGCGAG CCAGCTGGGC
TACATGATTG CCGGACAGCA AGCGACGCAA AATCGTATCT TCGAGCGCAG CACCTTTAAC
GACAAGTACC CCACCAAAGA TCCTGTCACG GGCCAGACCT TAACGCCTAT GCCTTTCATC
GATGAAACCA TTGGCTTTAA TCCAAGCCTG TTGGGTGGTG GACAGAGCCT GCCAAGCCTT
AACCTGTCAC GAGTATTCGT GCTCACCACT GACGACACCT GTTCCGCCAG TGAGGCGTTG
ATCAACAGCC TGCGCGGTAT CGATGTCGAG GTGATCCAGA TTGGCGGCAC CACCTGTGGT
AAGCCCTATG GCTTCTACCC AACGCCAAAC TGCGCCACCA CCTACTTCAC CATTCAGTTC
AAGGGTGAAA ACGACAAGGG CTTCGGCGAC TACTCAGATG GTTTCGTCCC CAGCAGCAAC
CCAACGCTAC AAAGCGAAGT GCCAGGCTGT GACGTAGCAG ACGACTTCAA TCATGCCTTA
GGCGACCAAG ATGAAGGCCA GCTGGCTGCG GCGCTCTACT ACCGTGACAA CAACAGCTGC
CCGGCTCAGG TGGCAAAGGC ATCCCGTACT CAGGCGAAAC CTCAGTTTGT TGATGCGGGT
TATGTGCTGC AAGATACCCG CAATCAAAAC CTGCTGTTTA ATAACCGGAT TCTGACTCAG
CCTAAGTAG
|
|---|
| Protein sequence | MKSISNALFT SLIASGLLLT GCSGGGSGSD TSGSGGSIGT GSTVKWVEGE FTPYAQLANQ
CDAGLKEKLW LRSWSNDTYL WYSEIIDRDP APYQVLEYFS LLKTENLSAT GNPKDQFHFS
MPTSEWEQLN QSGASVGYGM SFHLQQASST ADRKVTVTYT EPSSPATSAN IARGAVIVSI
DGVSVKDAND MASINTLNNG LFPSDDGQET RFTILDLGAS QTRDVVLTAQ TVVSTPVQNT
KVLASPSGNV GYFQFNSHIA TAERGLYDAI ATLANAKVDD LVLDLRYNGG GLLAMASQLG
YMIAGQQATQ NRIFERSTFN DKYPTKDPVT GQTLTPMPFI DETIGFNPSL LGGGQSLPSL
NLSRVFVLTT DDTCSASEAL INSLRGIDVE VIQIGGTTCG KPYGFYPTPN CATTYFTIQF
KGENDKGFGD YSDGFVPSSN PTLQSEVPGC DVADDFNHAL GDQDEGQLAA ALYYRDNNSC
PAQVAKASRT QAKPQFVDAG YVLQDTRNQN LLFNNRILTQ PK
|
|---|
| |