| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2688 |
|---|
| Symbol | |
|---|
| ID | 4923197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 3181552 |
|---|
| End bp | 3182889 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640164283 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_001094813 |
|---|
| Protein GI | 127513616 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
|---|
| TIGRFAM ID | [TIGR01891] amidohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.101321 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACGCC AGATCATTCA TCAATCCTGT TTAGCGGGCG CCCTGGTTGC CCTCGGCACC
AGCCAAAGCC TCTGGGCCCA AGACGAGGCG CTGTCGCAGT CGGTCAAGCA AGCCATGCCG
GCGCTCTCCA GTCTCTATCT CGAGCTGCAC CAAGCTCCCG AGCTTTCTTA CCATGAGCAA
CAGAGTGGCG AGAGAATGGC GGCCGAGTTC GAGGCCTTAG GTATAGAGGT GACCCGGGAT
TTTGGTGGTC ATGGCGTGGT TGGCATCTAC CGTAACGGTA AGGGGCCCAC TGTGATGCTC
CGCGCCGATA CCGATGCATT GCCGATTGTC GAGGAGACGG GCAAAGCCTA CGCCTCTAAG
GTCACCACGC TTGATGCCCA GGGCAATCAG GTGGGGGTGA TGCACGCCTG TGGCCATGAT
GTGCACATGA CCAATCTGGT GGGCACGGCG CAGCAGTTGA TTCAGCAAAA AGATAAGTGG
CAGGGCACCT TGATGCTGGT GGCTCAGCCC GCCGAAGAGG TGGGGGGCGG TGCCAAGGCG
ATGCTTAAAC AGGGACTGTT TAGCCAGTTC CCGACACCCG ATCATATTCT TGGGCTGCAT
GTCAGCGCCT CGGTACCTGC GGGTAAGGTG GCCATCGCCC CGGGCTATGC CCTGGCGAAC
GTGGATTCGG TGGATATCAG CGTGAAGGGG CGCGGCGGTC ACGGCGCCTA TCCCCATACT
ACGGTCGACC CTGTGGTCTT GGCGGCGCGC ATAGTGCTTG CTTTGCAGAC TATTGTCAGT
CGGGAGGTCT CGCCATTATC GCCCAATGTG ATCACCGTGG GCTCCATTCA CGGCGGCTCG
AAACACAACA TCATAGGCAA CGAGGTGAAG CTACAGCTGA CGCTGCGCTC ATACGATCCT
AAGGTGCGCG AGCAGCAGAT CGCCGCCATC GAGCGACTCA CTAAGGGGAT CGCCATTAGT
GCGGGACTGA GCGAGGCCGA GTGGCCTGAT GTGTATGTGC ATCAGGAGGA GAGCATTCCA
TCGACCTACA ACGACCCGGA GCAGACAGCT AAGGTCAGGG CCAGTATCGC CAAGCAGCTG
GGGGATGATA ATGTCTTGGA GGCATCACCT GTGATGGCGG GAGAAGATTT TGGCTTGTAT
GGCTTAACCC CCGCCAAAAG GCCAATCACC CTGTTCTGGT TAGGCGCTGT GCCCGCGGTA
GATTATGCGG CCAGTCAGGC ATCGGGCGCG AGTCTCCCCT CGCTGCATTC CAGCAAGTTT
GCGCCGGATT ACCCCGTCAC CATCGAGGCG GGAGTGCAGG CGATGAGCCG CGCGGCCTTG
GATCTGTTTA AGAAATAG
|
|---|
| Protein sequence | MLRQIIHQSC LAGALVALGT SQSLWAQDEA LSQSVKQAMP ALSSLYLELH QAPELSYHEQ
QSGERMAAEF EALGIEVTRD FGGHGVVGIY RNGKGPTVML RADTDALPIV EETGKAYASK
VTTLDAQGNQ VGVMHACGHD VHMTNLVGTA QQLIQQKDKW QGTLMLVAQP AEEVGGGAKA
MLKQGLFSQF PTPDHILGLH VSASVPAGKV AIAPGYALAN VDSVDISVKG RGGHGAYPHT
TVDPVVLAAR IVLALQTIVS REVSPLSPNV ITVGSIHGGS KHNIIGNEVK LQLTLRSYDP
KVREQQIAAI ERLTKGIAIS AGLSEAEWPD VYVHQEESIP STYNDPEQTA KVRASIAKQL
GDDNVLEASP VMAGEDFGLY GLTPAKRPIT LFWLGAVPAV DYAASQASGA SLPSLHSSKF
APDYPVTIEA GVQAMSRAAL DLFKK
|
|---|
| |