Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2673 |
Symbol | caiC |
ID | 4923126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 3163503 |
End bp | 3165059 |
Gene Length | 1557 bp |
Protein Length | 518 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 640164268 |
Product | putative crotonobetaine/carnitine-CoA ligase |
Protein accession | YP_001094798 |
Protein GI | 127513601 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATATCG TGGGCAGCAG AACATTAAGG TGCATGTGGC AGGAGCGTGC TCAGCAGTAC AGTGATAACA CGGCATTGAT CTATGAAGAT GCTGGCGGCG ATATCCGCAC CTTTACCTAT CAATCCCTTG ACGCCCAGAT TAACCGGGCG GCCAACCTCT TCCTCAAACA GGGAATAGCC AAGGGCGACA AGGTGGCGGT GCAGCTTTAT AACAGCCCGG AGTTTATCTT CTGCTGGTTT GGTCTGGCCA AGATAGGCGC GGTGATCGTG CCTATCAACA CCCAATATGT GCAGGGGGAG TGCAGCTACA TACTGACCAA GTGTGACGTC ACCGCCCTGG TGACAGAGCC AAGCTTTCTG CCTATCTATG AGGCGTTGGC GGCGAAGGGT CAAAGGCTCG AGCAGGTCTT TGTCGCCCGC GCTGCGGGAG AGCAGTTTGC GGGGCGGGTG AATTTTGATG ATCAGTTAGC ACTGCAGGCG CCAACTCTCG ACCTGCATGT GCCGCTGGAA AGCGAAGACC CCGCGGAGAT CCTCTTCACC TCGGGGACGA CCTCTCTACC CAAGGGAGTG GTGCTCACCC ACTGCAACCT GCAATTTGCC GGGCACTATA CCGCCTGGCA GACCCGCTTG ACGGCCAAGG ACAGGTATCT CTCCATGATG CCCAATTTTC ACATCGATTT TCAGTGCAAT GCGGCCATGG CGGTGTTTAC CGTCGGTGCT TGCCTGGTGA TGTTGGAGAA ATACAGCGCC CGCCGTTTCT GGAAGCAGAT TTGCGACTAC CGAGCCACGC TGACCCATAG CATGCCGATG ATCCTGCGCA CCCTGATGCT GCAACCCGTG GCCGAGGGGG AAGACCAGCA CTGTCTGCGG GATATGCTGT TTTTCATGCA TATCTCAGAT CAGGAGAAGC TGGATTTCGA GACGCGCTTC AAGGTGACCC TGTTTAACTC CTACGGCATG ACAGAGACCC TGGTGGGCTT GATTGGCGAC ACGCCCGGCG AGCCTCGTCA TTGGCCGTCA ATAGGACGCC CCGGGCTGGG ATATGAAGCC AAGGTGATCG ATGAGACCGG TCGGGAAGTG CCGCCCAACG TGGTGGGCGA TCTCTGGGTC AAGGGCGTGC CTGGCCGCAG CCTGTTTAAA GAGTATTACC AGGATCCACA GGCGACCGAG GCGGTGCTGC GCCGCGATGG CTGGCTCATC ACAGGGGACA AGGCCTATGT GGATGAGCGG GGACTGTTCT ACTTCGTCGA TCGCAAGAGC AACATGATCA AGCGCTCGGG CGAGAACATC TCCAGCACCG AGGTGGAGAA CGTGCTGATG TCACACCCCG CCATTCAGGA TGCCGCCGTC ATAGGTGTGG CCGATCCCAT TCGCGATCAG GCCGTCAAGG CATTCGTCAT ATTTGCCCCC GGCATGTCAC TGACCGTCGA GGAGATCTTG GCGTTTTGTA GCGCCAACAT GGCCAAGTTT AAGGTGCCCA GTTACGTGGA GATCCGTGAG GCTTTTCCTC GTACCTGCAC CTGCAAAGTC GATAAGAAAC TGCTCGAGAC CCGTTGA
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Protein sequence | MDIVGSRTLR CMWQERAQQY SDNTALIYED AGGDIRTFTY QSLDAQINRA ANLFLKQGIA KGDKVAVQLY NSPEFIFCWF GLAKIGAVIV PINTQYVQGE CSYILTKCDV TALVTEPSFL PIYEALAAKG QRLEQVFVAR AAGEQFAGRV NFDDQLALQA PTLDLHVPLE SEDPAEILFT SGTTSLPKGV VLTHCNLQFA GHYTAWQTRL TAKDRYLSMM PNFHIDFQCN AAMAVFTVGA CLVMLEKYSA RRFWKQICDY RATLTHSMPM ILRTLMLQPV AEGEDQHCLR DMLFFMHISD QEKLDFETRF KVTLFNSYGM TETLVGLIGD TPGEPRHWPS IGRPGLGYEA KVIDETGREV PPNVVGDLWV KGVPGRSLFK EYYQDPQATE AVLRRDGWLI TGDKAYVDER GLFYFVDRKS NMIKRSGENI SSTEVENVLM SHPAIQDAAV IGVADPIRDQ AVKAFVIFAP GMSLTVEEIL AFCSANMAKF KVPSYVEIRE AFPRTCTCKV DKKLLETR
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