| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2643 |
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| Symbol | |
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| ID | 4924121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3118781 |
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| End bp | 3119602 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640164238 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_001094768 |
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| Protein GI | 127513571 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.998826 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAACC TTAACGAGCA GCTAGCTGGC GACGATGACA GCCTTGCCGT AGAAGCGGCA
CCGACAATCG AGATCCTCTA TGAAGATGAC GATCTTGTCG CCATCCACAA ACCTGCCGGT
CTGCTGGTGC ATCGCAGCTA CCTTGCGCGG CGGGAAAAAT ATTTCGCCAT GCAGATGACG
CGGGATCTGG TGGGCTGCCA TGTGTTTCCC GTCCATCGTC TCGACAGGCC GACCTCGGGT
GTGCTGCTGT TTGCCAAGAG CAGTGAGATG GCGAATCAGT TGTGTGAGCA GTTCGCCAGC
AAGTCGGTGC AAAAGCATTA TGTTGCCCTA GTCAGGGGGA ACATGCACGA GCCTGGGCTG
CTGGACTACC CTTTGAAGCA GGAGCTTGAC GAGCTGGGTG ATAAGAATGT CGACCCTAAC
AAGGCGGCGC AGGAGGCGCA GACCAGTTAT CACCCCTTGC TCAACTGTGA GATCCCTTAT
CCTTCTGGCC GCTATGCCAG CAGTCGCTAT GCCTTGGTTC AGCTAACTCC CCATACGGGG
CGCAAGCATC AGCTGCGTCG GCATATGGCC CATCTGCGTC ATCCCATCAT TGGTGATACC
ACCCATGGTG ACGGCAAGCA GAACCGTTTC ATGCGCGAGC ATAGTGGCAT CAATCGTTTG
TGGCTGATCG CCAAGAAACT TGAGTTCAAT CATCCACGAA GCGGCGAGCG AATAGCGGTG
GAGACAGAGC TAGAGGCCGA GTGGCTGTCG CTGTTTGAAC TGCTCGGCTG GGATGACCAG
CAGCTGAGTG GCGAACAAGC GCTACTTATC TGTGAGGCTT AA
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| Protein sequence | MENLNEQLAG DDDSLAVEAA PTIEILYEDD DLVAIHKPAG LLVHRSYLAR REKYFAMQMT
RDLVGCHVFP VHRLDRPTSG VLLFAKSSEM ANQLCEQFAS KSVQKHYVAL VRGNMHEPGL
LDYPLKQELD ELGDKNVDPN KAAQEAQTSY HPLLNCEIPY PSGRYASSRY ALVQLTPHTG
RKHQLRRHMA HLRHPIIGDT THGDGKQNRF MREHSGINRL WLIAKKLEFN HPRSGERIAV
ETELEAEWLS LFELLGWDDQ QLSGEQALLI CEA
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