| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2557 |
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| Symbol | |
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| ID | 4921097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 3013951 |
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| End bp | 3014871 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640164151 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001094682 |
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| Protein GI | 127513485 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGCGTT TTGATGAACA GGTTGCTGTC GTCACAGGAG CGGGGGCTGG CTTAGGACGA
GCCTACGCGA TCGCCTTAGC CGAGCGCGGG GCGCGCTTGG CCATTATCGA TTCGGGTAGC
GGCGATAGTC GCTGCCAGAG TTATGCCGGC GCAGGCCTCA ACAAGACCGC CCGTACCCTG
GCCGAACTGG GCGCCGACTG CCTGAGCTTT CAGTTGGATG TCACCGACAG TCAGGCCCTA
AAGAGCGCGA TAGAGACTGT CCTCAAGCGT TGGGGTCGCA TAGATATCGC CATCAATAAC
GCCGGTATCC ACACGCCAGT CTCCTTCGAT AGCCTGAGCT TCGAGCAATG GCAGCGACAG
CTGGATGTGG ATCTCAACGG CAGTTTCCAT CTGACCAAGT TGGTGTGGCC GCAGATGAAA
CGGCAAAACT ATGGCCGCAT CGTCATGACG GCGGGGGCCA GTGGCCTCTA TGGCGACATG
CATGAAACCC CTTACAGCAC CAGCAAGATG GCGCTTGTCG GCCTGGTCAA CAGCCTGGCC
AAGGAGGGAC GCGACTACAA CATCTCGGTC AATACCCTGG TGCCCGAGGC ATTAACCGCC
ATGACGGCGC ATCATCTCAG CCCTCTGGTA AAGCCTCTGT TTAGCACCTC TTCGGTCAAT
GCCACCCTGC TGTACCTCTG CTCATCGACG GCCTGCAGTG GTCAGCATCT GCTGGCCGCG
GCCGGTAGTG TGAGCCACGG GATGTTTGTC GAGTTTCAGC CGCTGCGTAT TGTGGAAGAT
GGCTGCAAGC CCGAGGTGAT TGCCCAGCGC TGGGATGAGC TATACCGGGC GCAGCCCTGT
CATTTTCATG AGTCCGGCGA AGAGCAGGTA ACCGCCTGGG CGAGGCGCAG CGCCGCCGAA
CACCATGTGG ATATTGAGTA G
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| Protein sequence | MMRFDEQVAV VTGAGAGLGR AYAIALAERG ARLAIIDSGS GDSRCQSYAG AGLNKTARTL
AELGADCLSF QLDVTDSQAL KSAIETVLKR WGRIDIAINN AGIHTPVSFD SLSFEQWQRQ
LDVDLNGSFH LTKLVWPQMK RQNYGRIVMT AGASGLYGDM HETPYSTSKM ALVGLVNSLA
KEGRDYNISV NTLVPEALTA MTAHHLSPLV KPLFSTSSVN ATLLYLCSST ACSGQHLLAA
AGSVSHGMFV EFQPLRIVED GCKPEVIAQR WDELYRAQPC HFHESGEEQV TAWARRSAAE
HHVDIE
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