| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2544 |
|---|
| Symbol | |
|---|
| ID | 4921159 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 2999834 |
|---|
| End bp | 3001588 |
|---|
| Gene Length | 1755 bp |
|---|
| Protein Length | 584 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640164138 |
|---|
| Product | phosphoglucomutase/phosphomannomutase alpha/beta/subunit |
|---|
| Protein accession | YP_001094669 |
|---|
| Protein GI | 127513472 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1109] Phosphomannomutase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACAC AGATACAGGC AAGGATAAAA CATTGGTTGA GTCTCGATAG CGACGCCAAG
AGTCGCGCAG AGATCCAGGC CCTGGTCGAT CAGGGGGCGC AAGAGGAGCT GGTCGCAAGG
TTCGCCGGTC GTCTCACCTT TGGTACCGCG GGCATTCGCG GCGTGGTGGG CGCAGGTCCC
ATGCGGATGA ACCGTCTGGT GGTGCAGCAG ACCTCCAAGG GGGTCGCCGA ATACCTCAAG
GCTCAGGTGG AAAATGCAGT GAGTCGCGGC GTTGTCATCG GCTACGATGG CCGTCACGAC
TCCAAGCAGT TTGCCGAGGA CGCCGCCAGC GTGCTTACCG CCGCGGGTTT CAAGGTGTTC
CTCACCAGCA AGGTGGCGCC GACTCCTCTG GTGGCCTTCG GCGTTCTGCA TCTAGGGGCG
GCGGCCGGCA TAGTGGTGAC CGCCAGTCAC AATCCGCCGC AGTACAATGG CTATAAGGTT
TACTGGGGTA ATGGCGCGCA GATCATTCCG CCCCATGATA CCGGCATCGC GGCCCGTATC
GAGCTGGCGG CCAACTCGCC GGTGGATATG TTGCCGCTGG AAACGGCAGT TGAGACTGGT
AAGCTGGTGA TGCTCGAGGA GGATTACTAT CAGGCCTATC GTCAGGGCGT GTTAAACGCA
GAGGTGCTGC AAAGCCCCGC CCGTCCCGAG CTGGTGAGCC TGGCCTACAC CGCCATGCAT
GGGGTCGGCG CCGAAATGGC CGAGACCCTG CTTAAGGATA TCGGGGTTAC ACAGGTCTAT
TCGGTGGCGG CCCAGCGTGA GCCAGACGGT GACTTCCCCA CGGTGAACTT CCCCAACCCT
GAAGAGGCAG GCGCCATGGT TCTGGTGATG GCCGAGGCTC ACAAGCATGG TGCCATGCTG
GCCTGCGCCA ACGATCCAGA CGCCGACCGT TTCGCGGTGG CGGTGCGTAA ACCCGCTGCC
ACGCCAGAGA TGCTGGCCTC TGAGGCCTAT CAGATGCTGA CCGGAGATCA GGTGGGGGTC
TTGCTGGGCC ATTATCTGCT CTCCCACGCC AGTGATGATC AGCGACTGCT TTGCTGCACC
ATAGTCTCCT CCAGTTTGCT GACTCGCATC AGTGAGGCTT GCGGCGCCCG CTGCGAGACC
ACACTCACAG GCTTTAAGTG GCTGACCAAC GTCGGCATGA GCAAACAGAC TCAGGAGAAC
CGCTTCCTGT TCGCCTACGA AGAGGCGCTC GGCTACACGG TTGGCAGCAT GGTGTGGGAC
AAGGATGGTC TATCAGCCTT GGTCGCCTTC GTGCAGCTCA CTGCTGAGCT GGCCGCCAAG
GGGGAGACCC TGTGGGACAG GCTAGAGACC ATCTATCGTC AATATGGCTA TTATCTCAAC
CGTCAGGTGA GTATCGCCCT CAGCGGTGAG CCAGGTGCGC CCACCATAGG CGAGCAGCTA
AGGGCATTAG ATCCCAGCGA GATTGCCGGT AGGGCCCTGG TGTCTGTGGA TGACATCAGC
CTGGGCGTGC GCCGTTTTGC CGATGGCCGC GAAGAGACGA TCGACCTGCC TCGCAGCGAC
GTGCTCATCT ATCGTCTGCA AGGCAACGCT AGGGTGATAG TGCGCCCCTC GGGCACAGAG
CCTAAGGTAA AGTGCTATTA CGAGGTGGTC GAGCCTTTTG GCGAGCAGGA GGGGCTTGCG
GATGTGCAGC GCCGCGCCGA GGCCGCGATG GCGGAATTTG TCTCCCGGCA TCAGGCGGGC
TTGCCTAACG CCTAA
|
|---|
| Protein sequence | MQTQIQARIK HWLSLDSDAK SRAEIQALVD QGAQEELVAR FAGRLTFGTA GIRGVVGAGP
MRMNRLVVQQ TSKGVAEYLK AQVENAVSRG VVIGYDGRHD SKQFAEDAAS VLTAAGFKVF
LTSKVAPTPL VAFGVLHLGA AAGIVVTASH NPPQYNGYKV YWGNGAQIIP PHDTGIAARI
ELAANSPVDM LPLETAVETG KLVMLEEDYY QAYRQGVLNA EVLQSPARPE LVSLAYTAMH
GVGAEMAETL LKDIGVTQVY SVAAQREPDG DFPTVNFPNP EEAGAMVLVM AEAHKHGAML
ACANDPDADR FAVAVRKPAA TPEMLASEAY QMLTGDQVGV LLGHYLLSHA SDDQRLLCCT
IVSSSLLTRI SEACGARCET TLTGFKWLTN VGMSKQTQEN RFLFAYEEAL GYTVGSMVWD
KDGLSALVAF VQLTAELAAK GETLWDRLET IYRQYGYYLN RQVSIALSGE PGAPTIGEQL
RALDPSEIAG RALVSVDDIS LGVRRFADGR EETIDLPRSD VLIYRLQGNA RVIVRPSGTE
PKVKCYYEVV EPFGEQEGLA DVQRRAEAAM AEFVSRHQAG LPNA
|
|---|
| |