| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2541 |
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| Symbol | |
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| ID | 4921156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2997867 |
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| End bp | 2998553 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164135 |
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| Product | helix-turn-helix, type 11 domain-containing protein |
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| Protein accession | YP_001094666 |
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| Protein GI | 127513469 |
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| COG category | [K] Transcription |
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| COG ID | [COG2378] Predicted transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCGCG CCGATCGCCT ATTTCAAATC GTACAAATTC TCAGACACAG ACGCCTCACC
ACGGCTAAGC AGCTGGCGGA GCGACTCGAG GTCTCTAGCC GTACCATCTA TCGGGATATT
CAGGATCTCT GCCTGTCGGG GATCCCCATT GAAGGGGAGG CCGGCGTCGG CTATCTGCTG
CGCCAGGAGG TGAATGTACC GCCACTGATG TTTAACGAGC AGGAGCTGGA GGCGATACAG
GTGGGGATGC GTATGGTGCA GGCCCAGGGG GGCCACGAGC TGGCAAGCGC CGCCAAGCAG
GCGATGATCA AGGTCGAGGC CGTGTTGCCC GAGCGGCTCA AGGCCTATCA ATCTTTGATG
TTTGCCCCCG ATTTTTACAG TGAGGGGCAG CTGTTCTCCT TTCTCGACCT GCTGCGCAGG
ACGTCCCGGG AGCGAGAATA TATTCTATTG AGTTATCAAG ATGGGAAGCA AAGCAGTAGC
GAGCGCCAGG TTCGCCCCCT CGCGCTCTAT TACTGGCAAG GGGTCTGGAC ACTACTTGCC
TGGTGCGAGC TGCGCGGTGA TTTTCGTAAC TTTCGGGTCG ATCGCATCGT GGGCGTCTTG
CCCCTTGGCA GCCATTTTCA GCACACGCCG GGCCAGGAGA TGCCAGATTA TATCGCCATG
ATGCAGGCGC AATATGGCGA GTGTTAG
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| Protein sequence | MRRADRLFQI VQILRHRRLT TAKQLAERLE VSSRTIYRDI QDLCLSGIPI EGEAGVGYLL
RQEVNVPPLM FNEQELEAIQ VGMRMVQAQG GHELASAAKQ AMIKVEAVLP ERLKAYQSLM
FAPDFYSEGQ LFSFLDLLRR TSREREYILL SYQDGKQSSS ERQVRPLALY YWQGVWTLLA
WCELRGDFRN FRVDRIVGVL PLGSHFQHTP GQEMPDYIAM MQAQYGEC
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