Gene Shew_2540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_2540 
Symbol 
ID4921155 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp2997531 
End bp2997842 
Gene Length312 bp 
Protein Length103 aa 
Translation table11 
GC content55% 
IMG OID640164134 
ProductNIPSNAP family protein 
Protein accessionYP_001094665 
Protein GI127513468 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones42 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGTAA CCTGTCACGT GAAATACATC ATCGACCCGG ATAAGCTGAA TAAGTTTGAG 
CACTATGCCA GACTCTGGCT ACCTTTGGTG GCCAAGTTTG GTGGGCAACA TCACGGCTAC
TTCCTGCCCA GCGAGGGGGC CAACGATGTC GCCTTGGCGC TATTCAGCTT TCCGTCACTG
GCCAGCTACG AGCAATACCG CGAGGCCTCA GTGCATGACA AAGAATGTAT CGCCGCCTTC
GAGTACGCCA AGCAGCACAA GTTTATCCGC CGCTATGAGC GCAGCTTCAT GCGCCCGCTG
CTGCCGGAAT AA
 
Protein sequence
MAVTCHVKYI IDPDKLNKFE HYARLWLPLV AKFGGQHHGY FLPSEGANDV ALALFSFPSL 
ASYEQYREAS VHDKECIAAF EYAKQHKFIR RYERSFMRPL LPE