| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2528 |
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| Symbol | |
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| ID | 4921233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2982665 |
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| End bp | 2983828 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640164122 |
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| Product | transcriptional regulator, CdaR |
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| Protein accession | YP_001094653 |
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| Protein GI | 127513456 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3835] Sugar diacid utilization regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTACTTTC TCGATAATCA ACTCGCCCAG CAGATAGTCG ATCGCACCAT GGCGATCATA
GGACACAACA TCAATGTGAT GAACAGCCAA GGGGTGATAC TCGGCTCGGG CGAGCCCCAC
CGCATCGGCT CCACCCACGA GGGTGCCCTG CTGGCCATCA GTCAGAACCG CACCGTCGAG
CTAAACAGCG CCAGTGCAGC CAGCCTGCAG GGGGTCAAGC CTGGCATCAA CCTGCCGCTG
CACTATCAGG GTGAGATCAT CGGCGTAATA GGCATCACGG GAGAACCCGA ACACCTCAAA
GCCTTCGGTG AGCTATTGAA GATGACCGCC GAGATGATCG TCGAGCAGGC CAACTCGCTC
GATGTGGCCC AGTGGCGCGC CCGTCAGCAG GAAGAGTTTA TCCTGCAGCT GATAAAGCCC
GAGGGGCGGG ATCTCAATCA CCTGAAGATC TGGGCCCAGC GTCTGGATAT CGATCTCGAG
ATGCCAAGGG TCGCAGCCGT GCTGCGTATC AGCGACGACG CCGGCGACGA GCTGGCCAAC
TCCCAACTCA AGACGGTACT GCATCTGTTA GAGACGCCGT CACGCGGCAA CCTGATCGCC
ATGACCTCCA TGACTGAGCT GGTGATCCTC AAACCCGCCT TCTTAGACGG CAAGGCCTGG
AGCGCCGAGG CCGAGAGCCT GCGCATCGAC CGTCTGCTCA AGCGTCTGCC CAGTGAACTA
AACGCCAGGT TAAAGATTTC CCTAGGCCAC TACTTTCCCG CCACCATGGA TATCAACCGC
TCCTATCAGA CGGCGCTGGA AACCCTGAAT TTTGGCCAGC AGCTACACCC AGAGCAGAGC
AAGTACCTGT ATGAAGATCA TGCCCTGCTG GTGATGCTCT CTGGGCTAAA ACATGACTGG
CGCGGCGAGC AGCTACTGAG GCCGTTTCAG CGCCTCATCG ACAGGGATAA AAACGCCCTG
CTGCGCAAGA CACTGGCCAG CTATCTGGGC CATTTCGGCG ACCAGCAAGC CTGCGCCAAG
GCGCTGTTTA TCCACCGTAA CACCCTGAGG TACCGCCTGG ATAAGATCGC CCAGATCACT
AAGGTGGATA TTCAAAAACT CGACGGCCTG CTACAGCTCT ACCTGGGTCA GGTGCTGCTA
AGCCGCGGCC AGGACCAAGG CTAA
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| Protein sequence | MYFLDNQLAQ QIVDRTMAII GHNINVMNSQ GVILGSGEPH RIGSTHEGAL LAISQNRTVE
LNSASAASLQ GVKPGINLPL HYQGEIIGVI GITGEPEHLK AFGELLKMTA EMIVEQANSL
DVAQWRARQQ EEFILQLIKP EGRDLNHLKI WAQRLDIDLE MPRVAAVLRI SDDAGDELAN
SQLKTVLHLL ETPSRGNLIA MTSMTELVIL KPAFLDGKAW SAEAESLRID RLLKRLPSEL
NARLKISLGH YFPATMDINR SYQTALETLN FGQQLHPEQS KYLYEDHALL VMLSGLKHDW
RGEQLLRPFQ RLIDRDKNAL LRKTLASYLG HFGDQQACAK ALFIHRNTLR YRLDKIAQIT
KVDIQKLDGL LQLYLGQVLL SRGQDQG
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