| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2473 |
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| Symbol | |
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| ID | 4921141 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2908372 |
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| End bp | 2909619 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640164063 |
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| Product | tetratricopeptide domain-containing protein |
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| Protein accession | YP_001094598 |
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| Protein GI | 127513401 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0521171 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000640342 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAAAGG TTAATACACT TGCAGCCGCA CTATTGCTTG CCATTGGTGG AAGCCTGGTC
GTTGCACCTG CAGCAAACGC TGCCGAAAAA TGCCCCATTG AGAAGCGCCA GTCTAAGGCC
GTAGGCCAAA GCTCGGCAAA GAAAGTACAA AAGTCTTTTG AAGCTTATCA AGAAGGTAAT
ATCGACGAAG CGATTGCCGT ATTGCTTGAA GCCAGCCCTC GTGATGCTTT TGATAAGGCC
TATATTGCCC GTATGTTGGG TAACTTTTAC GCCGAAAAGA ATCAGATGGG TACGGCGATC
AAGTACCTGA AGCAAGCCGT TGACGCTGAT GTTCTTGGCG GCACAGACCA TGGTGCAACC
CTGCGTCTAT ATGCCGACCT GTTGATTCAG GAAAAGAAGT TTAAAGAGTC TATCCCTTAC
TACTACGAGT GGATGAAGTT TACCTGTAAA GAAGATCCAC AAGTGTATCG TCGTATAGGT
ATCGCTTATT CAGAGCTCAA AGAGTGGGAT AAGGTGCTCG GCGTTGTCGA TAAGGGTCTG
TCTATCAGTA CTAAGCCAGA TAAAGGCTTG TACCAGATGA AGCTGACGGC TTACTTCAAC
AAGAAAGATT ATAAAAATGC GATTAAAGTC CTAGAGACTA TGGTGCCTCT TTTCCAAGAA
GATGGCCGTC TATGGGTACA GTTAGCGCAG TTTTATTTGA TGACTGAAAG CTATGATAAG
TCTTTAGCAA CCTACGACTT AGCTTATAAG AATGGATTTT TAGAGACGTC GGGTAACATC
ACGCGTCTGT CTCAACTGCT GGCGCAAAAT GGTTCACCAT ATCGCGCGGC GAAAATCTAT
GAAAAGCATA TGAAGAGTGG CCTGATTAAG GAAGATGAGA AGACTTTCTC TATCCTGGGT
GGCTTCTATC ACAATGCTAA AGAGCTAAAG GAAGCGGCGG ATTATTATGG TAAGGCTGCT
GCCATCAACA ACGATGGTAA ACTTTACCTT AAACAAGCCC GTCTGCTCAC TCTGCAAGAG
AAGCACAAAG AGGCGATCCC TGTGCTGAAA AAAGCATTGG CTGCCGGCGG TGTGAGTGAA
GGTGAAGTTG AGTTTGAACT AACCTTGGCT TATCTAGGTA CTAAGCAGAT TAAAGCAGCA
TACAATGCCT GCTTGAAGGC TGCTAAGGAT GAGAAGACTA AGCGTTCAGC GACAAGTTAT
CTCGCCTATA TCAAGGAAAA GGCACGTATC TATAACGTCG CACTTTAA
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| Protein sequence | MQKVNTLAAA LLLAIGGSLV VAPAANAAEK CPIEKRQSKA VGQSSAKKVQ KSFEAYQEGN
IDEAIAVLLE ASPRDAFDKA YIARMLGNFY AEKNQMGTAI KYLKQAVDAD VLGGTDHGAT
LRLYADLLIQ EKKFKESIPY YYEWMKFTCK EDPQVYRRIG IAYSELKEWD KVLGVVDKGL
SISTKPDKGL YQMKLTAYFN KKDYKNAIKV LETMVPLFQE DGRLWVQLAQ FYLMTESYDK
SLATYDLAYK NGFLETSGNI TRLSQLLAQN GSPYRAAKIY EKHMKSGLIK EDEKTFSILG
GFYHNAKELK EAADYYGKAA AINNDGKLYL KQARLLTLQE KHKEAIPVLK KALAAGGVSE
GEVEFELTLA YLGTKQIKAA YNACLKAAKD EKTKRSATSY LAYIKEKARI YNVAL
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