Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_2436 |
Symbol | |
ID | 4921657 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 2863837 |
End bp | 2865153 |
Gene Length | 1317 bp |
Protein Length | 438 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640164026 |
Product | aromatic hydrocarbon degradation membrane protein |
Protein accession | YP_001094561 |
Protein GI | 127513364 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG2067] Long-chain fatty acid transport protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000365967 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00491561 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCGTT TCAACAAGAC AATACTCGCA GTAGCCGTCA CACTCGCTAG CTCACAGGCG ATGGCCGCCG GTTTCCAACT CAACAGCCAG TCAGCCACTG GTGTCGGCCG TGCATTTGCC GGTGATGCCG TCATCGCTGA CAACGCCTCA GTGCTGTCTC GCAACCCAGC GGCTATGGCC CTGTTTGACG AGAAGCAACT TTCTATGGGC CTGACCTACG CCGATGTCGA AGTCAGCGTG AAAGATGTTT ACATCGACTC GCTAGTGGGC CCGATCCACT ATGGTCATGT GGACGATGCG GCAGAAGCCA AGATCATCCC TAACTTCTAC TATGTCAGCC CGGTAAACGA CAAGTTTGCC TATGGCGTTG CCATGTTCAG CAACTTCGGC ACAGGCACAG ACACGACCCC TATGTCACAG CAGCTGGTTA ACGGCCTGCC TGCCCCGCTG GATCTTTTGG GTAAGACAGA AGTGACCACG CTCAACTTTA ACCTGAGCGC CTCTTACCGC TTTAACGACC ACTTCAGCGT CGGCGCCGGC GTCGATGTGA TCTATGGCCA AGGCACCCTG ACCCGCGGCG GTTTGGTACC GACTCAAGCC GGTGCAGTAC AGCAAGATCT TGTGGATGTT GACGCCGACG GCGTAGCATT CGGCGGCATC ATAGGCGCAG TGTATGAGAT CAACGCCGAT CACAGATTCG GTATGAGCTA CCGTTTCAGC CCAGATTTCA AGGCGACAGG CGACATCAAC ATGTATAACC CAGTTGCCGG TGCCAACGTC GCCTTCGATG AGATCAACAT CCCTATGCCG GATATCTTCC AGGTGGCGGG TTTCCATCAG CTGACCGAGA AGTTTGCCCT GCACTACACG GCGCAGCTGA CCACTTGGGG CGATTTCAAA GAGATCACAG TGACCGACGG CACCATAGGC GGCGTGCCTG TAGCACCTGA GGCTAGCCTC AAGACCTACG CCTGGGACGA CTCTTGGCTG TTCAGCGTCG GCGGCACCTA CACCCTCAAT CAGGACTGGA CAGTGCGCGC CGGTTATATG TTTGACCAAG GCGTCGTTGG CGAAGTCAGC TCTATCTCCA TCCCTGACTC TGACCGTCAG TGGTTCACCG CCGGTGCGAC CTATAACCTG GGTAAGCACG CTAGCCTGGA CTTCGGTGTC GCCTTCATCC GTGGTGAAGA TGTAGATCTT ATCGAGCACA GCGCCATCAC AGGCGGTCTG CCAATCGGTC CTGATACCGG CATGGTTCAC GCGACCACAC GCTCGAATGC CACTTACTAC TCTATGCAGT ACAACTACAA GTTCTAA
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Protein sequence | MKRFNKTILA VAVTLASSQA MAAGFQLNSQ SATGVGRAFA GDAVIADNAS VLSRNPAAMA LFDEKQLSMG LTYADVEVSV KDVYIDSLVG PIHYGHVDDA AEAKIIPNFY YVSPVNDKFA YGVAMFSNFG TGTDTTPMSQ QLVNGLPAPL DLLGKTEVTT LNFNLSASYR FNDHFSVGAG VDVIYGQGTL TRGGLVPTQA GAVQQDLVDV DADGVAFGGI IGAVYEINAD HRFGMSYRFS PDFKATGDIN MYNPVAGANV AFDEINIPMP DIFQVAGFHQ LTEKFALHYT AQLTTWGDFK EITVTDGTIG GVPVAPEASL KTYAWDDSWL FSVGGTYTLN QDWTVRAGYM FDQGVVGEVS SISIPDSDRQ WFTAGATYNL GKHASLDFGV AFIRGEDVDL IEHSAITGGL PIGPDTGMVH ATTRSNATYY SMQYNYKF
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