| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2334 |
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| Symbol | secF |
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| ID | 4922114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2727365 |
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| End bp | 2728312 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640163919 |
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| Product | preprotein translocase subunit SecF |
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| Protein accession | YP_001094459 |
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| Protein GI | 127513262 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0341] Preprotein translocase subunit SecF |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.307818 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTCGAGA TTTTATCAAT TAAAGGCACG ATCAACTTCC TGCGTCACGC CGTAGCTATC
AGTGCGCTAT CACTCATCTT AGTGATCGGC TCTCTGGCTT CACTGGCAGT TAATGGAATA
AACTGGGGTC TGGATTTCAC CGGCGGTACC GTCGTTGAGA TGGAGTTTAA GAACCCTGTC
GATCTGAATC AGCTGCGCGC AGCCCTGACC TCAGACGAGA CAGATGGCGC CGTGGTGCAG
AACTTTGGTT CAAGCCGCGA CGTGCTGATC CGTCTGCCTG TTAAAGAAGG CGTGAAGAGC
GACCTACAGG TTGCGCATGT GATGGAGGCC GCAGCTAAAG TCGATCCAGG TGTGAGCCAG
AAACGTGTCG AGTTTGTTGG TCCTCAGGTG GGTAAAGAGC TCGCCGAGCA GGGCGGCCTG
GCCGTCTTGG TGGCGCTGAT CTGTATCCTT ATCTACGTCT CTTTCCGTTT CGAATGGCGT
CTGGCCCTCG GTTCGGTGGC GGCATTGGCG CACGACGTGA TCATCACGCT CGGTGTGTTC
TCACTGTTCC AGCTGGAGTT CGACCTGACG GTGCTGGCGG GTGTGCTGAC GGTAGTAGGT
TACTCGCTCA ACGATACTAT CGTTGTGTTT GACCGTATCC GTGAGAACTT CCTCAAGATG
CGTAAGGGCA CCCCTGAAGA GGTGGTAAAC AACTCTATTA CCCAAACCAT GAGCCGTACC
ATCATCACCA CAGGTACTAC CCTGGTGGTG GTTGTGGCCT TGTTCCTCAA GGGGGGCACC
ATGATCCACG GCTTCGCGAC AGCCTTGCTG ATGGGTATCT TCGTGGGTAC TTTTTCCTCT
ATCTATGTGG CGAGTTTCCT GGCTGTAAAA CTAGGGATCA ACCGCGAACA TATGATGCCT
GTTGAAATAG AAAAAGAGGG CGCGGATCAG GATGCATTGA TGCCGTAG
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| Protein sequence | MFEILSIKGT INFLRHAVAI SALSLILVIG SLASLAVNGI NWGLDFTGGT VVEMEFKNPV
DLNQLRAALT SDETDGAVVQ NFGSSRDVLI RLPVKEGVKS DLQVAHVMEA AAKVDPGVSQ
KRVEFVGPQV GKELAEQGGL AVLVALICIL IYVSFRFEWR LALGSVAALA HDVIITLGVF
SLFQLEFDLT VLAGVLTVVG YSLNDTIVVF DRIRENFLKM RKGTPEEVVN NSITQTMSRT
IITTGTTLVV VVALFLKGGT MIHGFATALL MGIFVGTFSS IYVASFLAVK LGINREHMMP
VEIEKEGADQ DALMP
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