| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2296 |
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| Symbol | |
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| ID | 4922289 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2685678 |
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| End bp | 2688482 |
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| Gene Length | 2805 bp |
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| Protein Length | 934 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640163881 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001094421 |
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| Protein GI | 127513224 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGAA ATTATCTTGC CTTTGCGATT AGCCTTGCAT TGGCCTCTTC ACTTCCCGCC
TACGGGGCCG ACGACGAAGA GAAGCAACAA AATGATGAGA CCGAGATGGA AGTCATCGAG
GTGCGGGGGA TCTTAAGCAG TCTGAAAGAG GCGCAGTCGA TCAAGAAGGA AGCCGACAAT
GTGGTCGACG CCCTGGTCGC CGAAGATATA GGTAAATTCC CCGACAGCAA CGTCGCCGAG
GCGATGCAGC GTATCCCAGG GGTAAGCGTT AACCGCCTGC GCGGCGAGGG TCAGAGCGTT
ACTGTGCGTG GTCTGAGTGG CGACTACAAC GTCACCACGC TCAACGGCAG AAAGATCGCC
TCGGAAACCG TGGGGCGCGA CTTTAACTAT GATCTGATCG CCGCCGAGCT GATTGGTGGC
ATTCAGGTCA ACAAGACCCA GCAGGCCTCT CTGCCCGAAG GCGGCATAGG CGCCATCATC
AACATCGATA CCCTCAAGCC CCTCAACGTG GGCAGTAAGG TAGCCGGCTC TATCGAGGGC
TACTATAACG AGCGCGCCGG TGAGACAGAT CCCCAAGCCT CGCTGCTGAT CAGCGAGACC
TTTAACGACG ACGAGCTGGG GATCTTGATC TCCGCCAACC ACACCTCCTC CTTCACCCGC
TTCGACAGCC ACAGCGCACA GTGGGGCTGG AACGAGTGGA GCGAGGCCGA GCTGATGCCA
AACGGCGATC CTAACGTGTC GGGCCGCTTC CCCAGCTGGC CTAACATCAT GGTGAGCACG
GATCAGCGCG AGCGCAGCGG CGGTACGCTG GCGCTGCAGT GGCGCCCGAC CCCGAACCTG
GACATCAACT TTGATGCCCT TTATACCAAG TATGAGATTG AATCCACGGG GAACATGATC
TCCCTGGCCC TGTTTGAGGG CACCAACCTA GACAACATCC AGGATGTGCA GTTTGGTGCC
GACGGTCACA CCAACAGTAT CACAATCGGT GAGCCGGGCA ACATGGACTC GCCGGCCATC
GCCGAGCTGC TGGAATCGCA AAATCCCCGC GACAGTGATG CCATGCAGGT GGGGCTGAAC
CTCAACTACA TCTGGGACAA CTTTAACTTT AACTTCGACC TGGCCTACTC TGAGGCGGAA
GATGCCTCGG CGGCAGTCAG CTGGGTGGTG GTGCGTACCG CCATCGACAC CCTCACGGTC
AACTGGGATA ACGGCGAGCA GGTGCCCGAC ATCTCCTTTG GCGATACCGT GCTGGATGAG
AACATCGACT ATGGCGCCTG GTATGCCCGC ATCGACGGCG ACAAGGTGAA GGACAAGACG
GGTAACTTCA ACTTCAACGG CACCTATGAG CCGGACGATG GCATCATCAG CAAGGTGCTG
TTCGGCACCG GCTATAACAT GCAGGACAAG GGCAAGACCT ACTGGAGCCA GGAAAACCCC
AGCGCCTATA CCTTCCGCAA CGGCGTCACA GAGAGCGAGT GGATCAACGC CCCCGATAGC
GAAAAGGTGG ATATCGCCGG CAACACCCTC TGGGGACCGT TACCGGCAAC AGCCCTCAAT
CCGGGCAACT TCGACGACTT CATGGGTAGC TCAAACGCCA TGCTGCCCAA CACCTGGGCG
GGGATCAACA TTCCCGGGCT GTTCGACTAT TATCGATCCT TGGACAGCGA GGCATTCGAT
CAATACTTGG TGCCCAGACC TAACCTCACC GGCGGCAACA CCTATGGGGT GAAAGAGGAG
ACCATCCACG CCTACGCCGA GCTGATCCTC GAAGATGAGA TTGCCAGCAT GCCCTATATG
CTCGACTTCG GTCTGCGCTA TATAGACACA ACCGTCACCT CCTGGGGCTA CTCACAGGAT
CCCGCCAACA TCGCCTTCGA TGAAAACGGC CTGTTTACCG ACGCAGTGGA TACCGTCGGC
CTGGTGGAGT TTGAAGGCAA CTACAACAAG CTGCTGCCGA GCTTCAACGG TAAGCTGGGG
CTGACCGATG ATTTGGTCTG GCGTCTGTCG CTGTCACAGG CGATCTCTCG TCCGCCGCTG
ACCAACCTGT CGCCTGTCAC CTCTATCTGG CAAAACGAGG AGAAGACGCC GCCGGAGAAC
TTCATCTATG AGAATGACCC AGGCCTGGAG CCCTACTACG CCGATCAGCT CGATACCACG
CTGGAGTGGT ACTACAGCGA CAGTGGCACC CTTAACCTGG CCTTCTACTA CAAGGAGCTG
CACGGCTTCG TGATCTACGA GCCGACGCGG GAAACCATCA ATGGCGCCAG CTTCGAGGTC
ACCCGCCCCT ACAATGACGA TGAAAACCAG TCGCGTATCC GGGGTTATGA GCTGAACTGG
CTACAGACCT TCGACGACTT CCTGCCTGAT GCCCTGGCGG GCTTCGGTGT GCAGGCCAAC
TATACCTATA ACAACAGCGA GTCGGGTGAA TACACGGACG ATGGCGAGCA GTTGCCGTTC
AAGGGATTGT CTGATCATCA GTACAATGTG GTCGCCTTCT ACGAGAACCA TGGGCTTAAG
GTCAATGTGG CCTATAACTA TCGCTCCGAG TACAGCCTGG GCAAGCAGTG GTATTGGTCA
AATGCCCTCA ACGACTGGAC CTCAGAGACC CTACAGGTCG ACGAATGGGG CCAACTGGAT
ATGCAGGTGG GCTATGACGT CACAGACAAT ATCACCCTCA CCTTCGAGGC CAACAACCTT
CTTGACCCCG ATTATGTGCA GTACCTGAAC GGGGACAAGA ACCACGTAGA CTATATCTCC
AGCTGGGGTC GTAGCTATCG TGCGGGGGTT CGCTTCAAGT TTTAA
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| Protein sequence | MKRNYLAFAI SLALASSLPA YGADDEEKQQ NDETEMEVIE VRGILSSLKE AQSIKKEADN
VVDALVAEDI GKFPDSNVAE AMQRIPGVSV NRLRGEGQSV TVRGLSGDYN VTTLNGRKIA
SETVGRDFNY DLIAAELIGG IQVNKTQQAS LPEGGIGAII NIDTLKPLNV GSKVAGSIEG
YYNERAGETD PQASLLISET FNDDELGILI SANHTSSFTR FDSHSAQWGW NEWSEAELMP
NGDPNVSGRF PSWPNIMVST DQRERSGGTL ALQWRPTPNL DINFDALYTK YEIESTGNMI
SLALFEGTNL DNIQDVQFGA DGHTNSITIG EPGNMDSPAI AELLESQNPR DSDAMQVGLN
LNYIWDNFNF NFDLAYSEAE DASAAVSWVV VRTAIDTLTV NWDNGEQVPD ISFGDTVLDE
NIDYGAWYAR IDGDKVKDKT GNFNFNGTYE PDDGIISKVL FGTGYNMQDK GKTYWSQENP
SAYTFRNGVT ESEWINAPDS EKVDIAGNTL WGPLPATALN PGNFDDFMGS SNAMLPNTWA
GINIPGLFDY YRSLDSEAFD QYLVPRPNLT GGNTYGVKEE TIHAYAELIL EDEIASMPYM
LDFGLRYIDT TVTSWGYSQD PANIAFDENG LFTDAVDTVG LVEFEGNYNK LLPSFNGKLG
LTDDLVWRLS LSQAISRPPL TNLSPVTSIW QNEEKTPPEN FIYENDPGLE PYYADQLDTT
LEWYYSDSGT LNLAFYYKEL HGFVIYEPTR ETINGASFEV TRPYNDDENQ SRIRGYELNW
LQTFDDFLPD ALAGFGVQAN YTYNNSESGE YTDDGEQLPF KGLSDHQYNV VAFYENHGLK
VNVAYNYRSE YSLGKQWYWS NALNDWTSET LQVDEWGQLD MQVGYDVTDN ITLTFEANNL
LDPDYVQYLN GDKNHVDYIS SWGRSYRAGV RFKF
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