| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2257 |
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| Symbol | |
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| ID | 4922810 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2637166 |
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| End bp | 2637789 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640163842 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001094382 |
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| Protein GI | 127513185 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.071447 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAGCT TTAATAACTT GTTTAAGGGA GTGATCTTCG ACCTCGACGG CACCTTAGTG
AGCAGCTCCC TCGACTTTAA GGCCCTCAAG CAGGCAGTTG GCTGCCCGTT AGACCAGGAT
ATTCTCGCCT TCGTGCAGCA GCTGCCAACA GAGCGTGCCA AGAAGGCCCA TAAGATCATC
ACCCAGGCCG AGCACTTAGA TGCCCTAAGC GCCAGGGCGA TGAGTGGCGC CTTAGCCCTG
CTGGACTTTC TGCTACTGCA ACAGATCCCA ACGGCAATCG TCACCCGCAA CAGCCGCCAG
GCGGCCGAAT TAAAGATAGA GCGCTGCGCT CTGCCGATCG ATCTCATTCT CAGCCGCGAC
GATGGCCCGG CCAAGCCAGA TCCCAGCTGT CTGCTAGCCC TAGCAAAGTT GTGGCAGCTG
CCGCCATCGC AGATAGCCTA TGTGGGCGAC CATCACTATG ATATCCAGGC CGCCAAACGG
GCAGGCATGC CATCTGTGCT GCTCAGCGAG CAGAGAGCTC ATGGCGAGCA GAAAACCTAT
GGCGAGCAGC ATGGCGCCAG CTACATCTTC AGGGATCTCA TGGCGCTGCA CAGGGCCTTG
CCCTCCATCT CTCTGTGCGC CTGA
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| Protein sequence | MQSFNNLFKG VIFDLDGTLV SSSLDFKALK QAVGCPLDQD ILAFVQQLPT ERAKKAHKII
TQAEHLDALS ARAMSGALAL LDFLLLQQIP TAIVTRNSRQ AAELKIERCA LPIDLILSRD
DGPAKPDPSC LLALAKLWQL PPSQIAYVGD HHYDIQAAKR AGMPSVLLSE QRAHGEQKTY
GEQHGASYIF RDLMALHRAL PSISLCA
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