| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2247 |
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| Symbol | |
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| ID | 4922883 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2626643 |
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| End bp | 2627275 |
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| Gene Length | 633 bp |
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| Protein Length | 210 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640163832 |
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| Product | putative transcriptional regulator |
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| Protein accession | YP_001094372 |
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| Protein GI | 127513175 |
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| COG category | [K] Transcription |
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| COG ID | [COG1386] Predicted transcriptional regulator containing the HTH domain |
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| TIGRFAM ID | [TIGR00281] segregation and condensation protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0043002 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGTCGAGTA AGAAACTGCA AATAAATCCG GATCAGCTCA AACAGCTGAT TGAAGCCAGT
CTGTTTGTGA TGGCTAGGAC TGTCTCTATC AAGCACCTAA ATGAGAGTGT GCTGGCCAAC
TTTAGCGTCT CCCGCGCCAA AGTGAAGGCG GCCATTGAGG AGTTGCAGCA GGATTATCAG
GGGCGCGGCA TAGAGTTAGT CAAGGTGGCG GGCGGATATC GTTTTCAGTC CATCGAGACC
TTGAGCCCTT ATTTGCAGCC TCTGTGGCAG GAGAAGGCGC CGCGCTATTC GCGAGCGACG
CTGGAAACGC TGGCGGTGAT CGCCTATCGT CAGCCGGTTA CTCGTGCCGA TATTGAGTTT
GTTCGTGGTG TGGCGGTGGG AAGCCACATC ATAAAGAGTC TATCCGATAG ACATTGGATT
AAGATAATCG GTCATAAAGA GGTACCGGGC AGGCCCGCGC TCTATGCGAC CACAAATGAA
TTTTTAGCCT ATTTTGGCTT GGACAGGATA GCGGACCTTC CTCCCTTATC CGATGCCGAG
TCACTAGCGG CGCTGTTTGG ACAAACCCAG GCGGTCGACT CGACCCCTGA CAACACAGCG
CCTCAAACCG ATGAAGAGTC TACTAATGAG TGA
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| Protein sequence | MSSKKLQINP DQLKQLIEAS LFVMARTVSI KHLNESVLAN FSVSRAKVKA AIEELQQDYQ
GRGIELVKVA GGYRFQSIET LSPYLQPLWQ EKAPRYSRAT LETLAVIAYR QPVTRADIEF
VRGVAVGSHI IKSLSDRHWI KIIGHKEVPG RPALYATTNE FLAYFGLDRI ADLPPLSDAE
SLAALFGQTQ AVDSTPDNTA PQTDEESTNE
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