| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2218 |
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| Symbol | |
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| ID | 4923039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2589005 |
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| End bp | 2591644 |
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| Gene Length | 2640 bp |
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| Protein Length | 879 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163803 |
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| Product | signal transduction histidine kinase regulating citrate/malate metabolism |
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| Protein accession | YP_001094343 |
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| Protein GI | 127513146 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3290] Signal transduction histidine kinase regulating citrate/malate metabolism |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.116111 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATGGAT CACAAGCCCC TATGGTCGCC AATGAGAAAG ACGAGGCCGG CTCATTAAAC
ACCCAGTGGA AAAACAGCCT TACCTTTAAA TTCACCATAG TCCAATTTGT GGTCGCGGTT
CTGATCATCG CCTCAAGCAT CTGGTTGATC TTCTCAACCG AGAAGAAACA TCACATGGAC
ACCCAGCTCT CGCTGAGCCA GAACTATGGC CTGGCGGTCA TAGAGCAGCT GCAACAGGTC
ACCTCCAAAA TCGAGACACT GGCGAACACC ATAGGCATAG TGGGCGAAAC CTATCGCGGC
CAGGATGAGG TGGTCAAAGA GCTGATCCCT TCCCTGCTGG ATATTGGCGA GCGCCATCAG
CTGATCGCCG GCGGCGGGAT CTGGCCCGAG CCCGGCATGT TCGGTAAACA GAAGACGCGC
AACAGCTTCT TCTGGGCGCG GGACAAGCAT GATGAGTTTC AATACCTGGA CAACTACAAC
AGCGCCGAAG GCCCTGGCTA TCATCAGGCC TTCTGGTATC TACCGGCGAA ATATTTCCAA
GATGGCCATA CCCACTGGTC TAAGTCCTAT GTAGACCCCT ACACCAAGGA GGTGATGATC
ACCGCCTCAG TCCCCATGCG CGCCGACCAC AGCTTTATCG GCGTGGCCAC GGTCGACATC
GCCCTGCGCG GCCTGGATAA GCGCTTTAAT TTTTCCGACC AGAATCCCCT CTCTAAAGGA
TATATCCTAG CGCTGGACAG CTACAACAAT CTGCTGGCGG ATCCTTTCGA CGAGTCTGAT
AAGCAGCAGA CCGCCATGCT CGGCCAGCCG CTCTCTAGAC TTATTCAGCG CTACCCGCAG
CTCGCCCCCA TCGCCAAACG CATAGAGACG ATGGACCAGG CCTTTAGTCA GCAGATAATG
ACCAGCCCGG CCTATCGCCC CGAACAGCTC GAGAAAGTAC TGGTACAGAC GCCTAGAGAG
GAACGAGACC GCTTAACCAC ACTCATCAAT GCCTCTATCA GGGGAAGCCA TGGCAAGACG
CCCATAGTGA CCCTGGAGCT AAGTAGCGAT CCCCTATTTA ACGAGCCCGT GCTGGTGTCG
ATCCTCACCA TGGCCCAGAC CCAGTGGAAG ATCATCCTAG TAACGCCGCT GTCGAGCCTC
GCATCCCAGG CCAACGCCAT CGCGCTGAAG ATAGGCGCGT TTCTGTTGCT GGCGCAGCTC
ATCGCCCTGC TCATTCTGTT TATCTTTCAG CACAAGCTCT TTATCCGGCC AATCTTTCAG
ATCGTCTCGG CGCTGCAAAG CGGTAACCTG GGCAGGCTGG AACTCGATGC CAACAAGCGC
CACGACGAGG TTGGCCAACT GGCCAAGGCC TTTATCGCCC GCAGCAATCA GCTGGAGATC
GCCTATGCCA GTCTCGATGC CAGCAACCTA GCGCTGGAGC AACAACTGGC GATGCAACAA
CTGGCGCAGC AGGAGCTGGA GAATAAGAAG GAGTTGATCA ACTCCCTGCT CAACGCCTCG
CAAAACCTCA TCTGCATCAA GGACACCCAC GGCTGTTACT CCTTGGTCAA CGACAAGTTC
TGCGAGGTGA TGGGCATAGA GCGAGCCCGG GTCATCGGCA TGCGCGACAG CGACCTCTAT
CCGGCGCATA TCGCCGAGAT CATCAATCAC CACGACCATA TCATCTTAGA TAGCGATCAA
GCCCAGAGCT TCGAACAGCC CATGCCCACG GTACACGGTG AGCGTATCTA CCTGATCACT
AAGTACCCAA TCAAAGACAA GGATGGCAAC ATCATCGCCC TGGGTGCCAT GGCGGTAGAT
ATCAGCAGCC TCAAGGCCAA GCAGGCAGAG TTGGAGCAAA CCATCAAGCT ACAAGGGGCA
AGAAACACAG AGCTAAAACA GGCCTTAGAT GCCAAGCCAC AAGCCATGGT AAAAGAAGGG
ATAGATCCCA AAGGACTGGC GCAGCTTAAA CAGATTGAGC TGGCCCAGCA GGCTATCTTG
CCTCAAGTAG TTCATCAGTT ACTGCGCCAG GAGCTGCAAG CGCTAGAGCA GATCTTTATC
CAGCTGCGTC AGTTAGATAC GGCCGATATC GATGAGCCTC AACTAGCCAA ATTTACCGAG
GCCCTGACAT CCCAGATAGA CATCATACGC CATGGTCAAT CCTTGATCAG CGCAGACATC
ACAGATGTTC GCGCCACTGT AGCCGACCTC TTCTTGCAAG ACCTGGTGGC CATGTTAAGG
CCTCAACTCG AGGCCAAGGG CGTAGCGGTG GAGATAGACT GTCCCCATCA CCTGACACTG
CCCATCTCAC CCTGGCATTT TCTGGTGCTC TGCCACAGAT TGCTCGGCAA CAGCCTACAA
CATGCGTTTC CCGACGGTCA GGCGCTCAAT CGACCGAAAC AGCTGAGCCT AGGTATTCGC
TATCGAGAAG GCTTGCTCAC TCTGACTCTG AGAGACAACG GCCTGGGGAT TGGCAAAGCT
CGGCTGGAGA AACTCACTCA CGCGCTAGAC AGCAGTAGCA ATAATAATGA CAAGGGACAA
GGCTCCCTCA TCCATATCAA TCAGTGGCTC AAGGCTCACT TCAACGGCAG ACTCACTGTC
AGCAGCCAGA GCGCGCAGTT TACCGAGCTG GTATGCGAGT TACATCTCGA TAAGGCATAA
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| Protein sequence | MNGSQAPMVA NEKDEAGSLN TQWKNSLTFK FTIVQFVVAV LIIASSIWLI FSTEKKHHMD
TQLSLSQNYG LAVIEQLQQV TSKIETLANT IGIVGETYRG QDEVVKELIP SLLDIGERHQ
LIAGGGIWPE PGMFGKQKTR NSFFWARDKH DEFQYLDNYN SAEGPGYHQA FWYLPAKYFQ
DGHTHWSKSY VDPYTKEVMI TASVPMRADH SFIGVATVDI ALRGLDKRFN FSDQNPLSKG
YILALDSYNN LLADPFDESD KQQTAMLGQP LSRLIQRYPQ LAPIAKRIET MDQAFSQQIM
TSPAYRPEQL EKVLVQTPRE ERDRLTTLIN ASIRGSHGKT PIVTLELSSD PLFNEPVLVS
ILTMAQTQWK IILVTPLSSL ASQANAIALK IGAFLLLAQL IALLILFIFQ HKLFIRPIFQ
IVSALQSGNL GRLELDANKR HDEVGQLAKA FIARSNQLEI AYASLDASNL ALEQQLAMQQ
LAQQELENKK ELINSLLNAS QNLICIKDTH GCYSLVNDKF CEVMGIERAR VIGMRDSDLY
PAHIAEIINH HDHIILDSDQ AQSFEQPMPT VHGERIYLIT KYPIKDKDGN IIALGAMAVD
ISSLKAKQAE LEQTIKLQGA RNTELKQALD AKPQAMVKEG IDPKGLAQLK QIELAQQAIL
PQVVHQLLRQ ELQALEQIFI QLRQLDTADI DEPQLAKFTE ALTSQIDIIR HGQSLISADI
TDVRATVADL FLQDLVAMLR PQLEAKGVAV EIDCPHHLTL PISPWHFLVL CHRLLGNSLQ
HAFPDGQALN RPKQLSLGIR YREGLLTLTL RDNGLGIGKA RLEKLTHALD SSSNNNDKGQ
GSLIHINQWL KAHFNGRLTV SSQSAQFTEL VCELHLDKA
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