| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2207 |
|---|
| Symbol | |
|---|
| ID | 4923028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 2567553 |
|---|
| End bp | 2569835 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 640163792 |
|---|
| Product | integral membrane sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001094332 |
|---|
| Protein GI | 127513135 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.166244 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAAAA AGCCCATTGC CTTACTACTG CTCGCGATAC TGATCAGCCT CAGCCTGGTC
GGTATCACCG CACGTATGGA TCCTCCCGAG GCAAGGGCCG ACATCACAGA GCGAGAGGCG
CAGCTGACGA CGCTACCGGA AAACCAACAG GGAGAGCTGC TCACCGCGCT GGTCAAACAT
TATCGCGACA ACGACCCCCT CAAGAGCCTG GCCTATGGTG AACAGGCGCT GACCCTCTTC
TCCAAGATCC CCGACGATAT CCGTAAGGTC ACAGTGCTGA ACAACATGGC CTGGATATAT
GTCTCCCTGA GTCAGTATGA AAATGCTCAG CTGCGCACCG ACCAGGCCAA ACAACTGGCC
AAGGCAAGCA ATGACCCACA TGGACTCTTT ACCGCACAGA CCATGCAGGG GATCATCTAT
TGGCGCAAGG CGGACTATCA GACCGCCCTC AAGACCTTCG AACAGGCACA GGAGATAGCC
AAGCAGGAGA AAAATCTCAG GGGCATCGCC AGCACGACCA ACTATATGGC GATCATCTAC
CAGACTCTGG GGCAACCTGA GAAGGCGCTC GACTATTTTA TCCGCGCCTT CAACATTCAA
AAAGAGGTGG GGGATGAGAA GAGCATTGCC GTCTCCCTCA ATAACATCGC CAACATGTAT
GGCACCAGCG GCAACTATAG CCTGGCGCTG GACTATCAAC TGCAGTCGAG GAAGATTCGT
GAGGAGCTGA ACGATCTGCC TGGCCTGGCC CAGATCCTGG GGAATATCGG CCTCACCTAC
TTCTATCTGA AGGACAGCGA ACAGGCCCTC TCTTACCTGC AACGCTCTCT GGGTTACTAC
GAATCCCTCA AGGATCAACA GGGCATCGCC GAGATCCACG GCAACCTAGG CATGGTCCAT
CTGCACGAGC ATCAATTGGA GTCGGCGCTG TTGCAGTACC AAGAGGCCCT GGCGCTGGCC
AAGGCGATCC CTGATACGGC GCTCGAGGCC AGGATCAACA TAGATCTCGC CAATGCCTAT
ATCGAACTCG ATGACCCCGA ACAGGCCTTC AAGCAGATCA CCACGGGCTT AGATCAAGCC
AATAAGCTGG GTATCGTCTC CCTCAGCGCC TATGGCCTGC TGACCCTCGC CAAGGTGGAG
AAGCTACGCG GCAACAGTGA ACGCGCCCTC ACCTTGAGTG CGGCGGCGTT AAACAGCTCC
CAGCAGCTGC AAGATAAGCG TATCGTGCGC GATGCACACG AGTTTCGCTA TCAGCTCTAC
AAACATCTCG GACAGGCCGA ACAGGCGCTG GCGAGTCTAG AAGCCTTTAA GCAGGTAAAC
GATGAAATGT TTAACTCTGA GAGCGATCAG AGAATGGCCT TTCTCCTCAG CCACTTCGAG
GCCGAGCAGC AGGAGCAGCA GATAAAGTTG CTGCAGGCCG ATCAGGCGCT GCAGAAGACC
CAGCTGGCGC AACATACTTA TCAGCGCAAC GTATGGCTAG GCGGCCTAAG CGTCTTGTTT
ATCATCCTGC TCCTGCTGGT GAATCGTCAT CACCAGCGCA AGATCAACGC CTCCCTCAAT
CAGAACATTC AATCTCAACG TGAATTAATT CAAGCCGTTG CCCACGAGTT TAGATCCCCG
CTTGCCCGGG TTCAGCTGGC CTTCGACATG CTGGAAGAAC AGTTTGAGCA GGACAAACCC
ACTCGCCTCA TCGACACCAT CAACAAAGGC CTGAGTGAAC TGGAGAAGCT GATCAAAGAG
GCGCTGGATT TCATCCAGAT AGAGAGTAAA TCCAGGCCGT TGCACCTCTC ACAGGTTAAC
CTCAATAAGC TGCTGGGTGA GTTGATGGAC GCCAATAGTG TCCTCTACCC CGACAAGACC
TTTAAGCTGG AGGTTAACCC AAGCGAAGCT TGCCTGGTTA AGGCCGATAG CACCCAGATT
GCGCGGGCAT TTTCCAATAT ACTGCGCAAC GCGGCCCGAT TCGCCCGCTC TCAGGTACTC
ATTAGCCTCA AGCAAGAAAA GTCCCGTATC CTGGTCATCA TCGAAGATGA TGGCCCAGGG
ATCCCCACGG AGCAGAGAGA AAGGGTGTTT GAACCCTTCG TCAGGCTAGA TCAAAGCCGT
TGTCGGGACT CGGGCGGTAT CGGCCTGGGT CTCGCGCTGG CCAAGAAGAT ATGCGAAGCC
CATGGTGGCG CCCTCACCAT CTCCGCGTCC CAGCTCGGCG GCGCCAAGTT GTCGCTCGCC
TGCCCTTTAG TTAACAGAGA GTCTGATAAC AAAAATTCTT CAACCAAGGC AGCTGAACAC
TAA
|
|---|
| Protein sequence | MRKKPIALLL LAILISLSLV GITARMDPPE ARADITEREA QLTTLPENQQ GELLTALVKH
YRDNDPLKSL AYGEQALTLF SKIPDDIRKV TVLNNMAWIY VSLSQYENAQ LRTDQAKQLA
KASNDPHGLF TAQTMQGIIY WRKADYQTAL KTFEQAQEIA KQEKNLRGIA STTNYMAIIY
QTLGQPEKAL DYFIRAFNIQ KEVGDEKSIA VSLNNIANMY GTSGNYSLAL DYQLQSRKIR
EELNDLPGLA QILGNIGLTY FYLKDSEQAL SYLQRSLGYY ESLKDQQGIA EIHGNLGMVH
LHEHQLESAL LQYQEALALA KAIPDTALEA RINIDLANAY IELDDPEQAF KQITTGLDQA
NKLGIVSLSA YGLLTLAKVE KLRGNSERAL TLSAAALNSS QQLQDKRIVR DAHEFRYQLY
KHLGQAEQAL ASLEAFKQVN DEMFNSESDQ RMAFLLSHFE AEQQEQQIKL LQADQALQKT
QLAQHTYQRN VWLGGLSVLF IILLLLVNRH HQRKINASLN QNIQSQRELI QAVAHEFRSP
LARVQLAFDM LEEQFEQDKP TRLIDTINKG LSELEKLIKE ALDFIQIESK SRPLHLSQVN
LNKLLGELMD ANSVLYPDKT FKLEVNPSEA CLVKADSTQI ARAFSNILRN AARFARSQVL
ISLKQEKSRI LVIIEDDGPG IPTEQRERVF EPFVRLDQSR CRDSGGIGLG LALAKKICEA
HGGALTISAS QLGGAKLSLA CPLVNRESDN KNSSTKAAEH
|
|---|
| |