| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2205 |
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| Symbol | |
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| ID | 4923119 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 2565206 |
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| End bp | 2566408 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163790 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001094330 |
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| Protein GI | 127513133 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.13158 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAGGC GTTTTCGACA GCTCACACTC AAAACAACTA CATGCTTTGC CTGTAGCTTA
ATACTACTGC TCTCTAGTCA AGTCGCGGCA AATGCTAGCC TTACTCAACC TCAGCCTATG
CTCATGCCTT ATGCACTCAC ATCTCACGCC CTCATGCCTG GCACGTTGGC CGCCCCCTAT
AGCATGGTCG CCACCGCAAG CCCTAGACTC GATCAGAGCG GCAAACCATT CCAGTTTGCC
CCGGCGCAAT CTAACCTGGC TTCCGTAGGC CTTTCCCAAA TTTCCAAGGT CTCAGCATCA
CCTCTGCACG ACCCAAGCCG TCAGGTCGGC TTTGCCTCCT CATGGCTGGG CGAGCTCAAA
GCCCATTATC CGAATCTGCT GCTTCATTAT CTTGCGCCGC TTATTGCCAT CGCCTTGGTG
ATGCAGCGGG TTTACAGACA GGCTAGTACC CTATCCAGAA CACGACTGGA GCAAGCGATC
GATGAACGCA CTCAGGCGCT GCAACTTGAA AACCTGCGCC TGCAGGAGAT GAGTCACAGA
GATCCCCTGA CCGGCCTTAA GAATCGCCGC TTCATCGAAG AGATGATTGC CCAAGACCTG
AATCGGGTCG ACCGCAGCTA TGACGCCACG CAGCTAAGGG GTGAAGGCAC GCCGAGCAAA
GCCGACCTGC TGGCGCTCAT CATAGATATC GATCACTTTA AGCCCATTAA TGACACCTAT
GGTCATCTGG CCGGCGATCG CGTACTGAGC CAGGTGGGTC AGCGACTGAC GACACTGTTT
CGCAACTATG ATTATGTGGT GCGCTGGGGC GGTGAAGAGT TTCTGGTGGT GGCACGCTTT
ATCGATCGCC AAGAGATAAA CCACCTCGCA GAAAAAGTCC GTCACGCCAT CGAGTCGATG
GAGATCGAAC TCGACGCTAA GCGCAACATC AAGATCACCG CCTCGGTCGG CGCCGCCCCC
TACCCCTTCT CCACAGCCCA GGCGGACAGG ATAAGCTGGG AGCAGGTGGT TCATCTTGCC
GACATGGCGC TGTACCAAGC CAAGACCAGT TCGCGTAATA CCTGGGTTAG TTACAGGGGG
AGTGACCAGC TGCCTATCCC GGATGAGCTG CAATTAGACC CCGCCAAGAT CCCTCGAATC
GCTATGGTTT CATCTAAGCC ATTGTCTAGG CAGAGTCTCG ATCTAAGGAA AGCCTCTCTA
TAA
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| Protein sequence | MARRFRQLTL KTTTCFACSL ILLLSSQVAA NASLTQPQPM LMPYALTSHA LMPGTLAAPY
SMVATASPRL DQSGKPFQFA PAQSNLASVG LSQISKVSAS PLHDPSRQVG FASSWLGELK
AHYPNLLLHY LAPLIAIALV MQRVYRQAST LSRTRLEQAI DERTQALQLE NLRLQEMSHR
DPLTGLKNRR FIEEMIAQDL NRVDRSYDAT QLRGEGTPSK ADLLALIIDI DHFKPINDTY
GHLAGDRVLS QVGQRLTTLF RNYDYVVRWG GEEFLVVARF IDRQEINHLA EKVRHAIESM
EIELDAKRNI KITASVGAAP YPFSTAQADR ISWEQVVHLA DMALYQAKTS SRNTWVSYRG
SDQLPIPDEL QLDPAKIPRI AMVSSKPLSR QSLDLRKASL
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