| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2160 |
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| Symbol | |
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| ID | 4923332 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2506721 |
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| End bp | 2508457 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640163745 |
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| Product | hypothetical protein |
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| Protein accession | YP_001094285 |
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| Protein GI | 127513088 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01887] dipeptidase, putative |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000828835 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCTTA AACTCTCCCT TAAAGCCGCC GGCGCCTTCA GTCTATTGCT GTGCAGCGGC
TTAACTTTTG CCACCTCTCA AGCCGATTCA CATCTTAGTG CCCAAGGCGA TTCAGCTGTA
AGTGCTAAAC CCCCTCTACA AGCCGCGCCT AAGATCTCGG CCCTGGCCGA CCGAGTGGCT
CAATATGCCC TTAATACCTA TGGCGATGAG ACCATCTCCG CGCTATCGAC CCTGATCCCC
TTTAAGACGG TGGAAACAGA GGGGATGACC CCCTTGACCC ATCCCGAATT TATCGGCTTC
AAGGCGCAGT TAAAGTCCCT GAGCCAGAGC CTGGGGCTGG ATTACAGCGA TCAAGGCTAT
GTGGTGCTTA TCGGTCTGGG GGAAGGGGAG CAGAAGCTTG GGGTGATCAC CCACGGCGAT
GTGCAGCCCG CCGATGCCAG TTTCTGGCAG CAAGACCCCT TTACCCTGGA CAGTCAGTCA
CAGCCAGGTT TTTTGATTGG TCGCGGCACC GAAGATGACA AGGGGGCGAT AGTCACCGCC
ATGTATGCCA TGAAGGCGAT CAAGGACAAG GGCCTAGCTT TAAACAGGCG CATCGAGCTG
CTGGTCTATC TTGCCGAAGA ATCGGATTGG GCGCCGCTGA AGGCCTTTTT GACCGACTTT
ACCCCCGCCG ATATCAATAT CACCATAGAC GCCGAGTACC CGGTGGTGAC CGCCGAGAAG
GGCTGGAGTG AAATTCGCCT GACTATTCCT AAGATGCCCA AGACGCCCAA GATGCCCAAG
ATGCCTAAGA ATGGTAAAGC AGCCTCTAGC GCGTCGGCCA GCCTAGATGG TTTTTCTGGC
GGTGCCTTCG ACAGCCAGGT GCCCCAGCAG GCGGTGGCCA AGATCTCTGG GCTAGATAAG
AAGACAATCG CTGCGCTTAA GGATAAGGCC AGCGCCCAGC AGGGGATGAA GTATCAATTT
GAGCAGACAT CATCTGAGGG CCAAGTTAAC GGACAGCTGA CCATCACTGC CGAGGGCAAG
TCGACCCACT CTTCTACGCC CGAGGCGGGG GTCAACGCCG TGACCCATCT GGCCGAGCTG
TTGAAGGGGA TTCATTTTGC GCGTAGCGAG TCGGCGATGA CGGCGAAGTT TATCCAGCAG
ATGGTGGGGC TAGGGCTCTA TGGCGAGCAG TTTGGCGATA TCGCCTATGA AGATGATTTT
ATGGGGCCCA TGACCCTGGC CGCAACCCTG GTGAAGCCAA ATGATCAGGG CACAGAGATA
GTGCTTAACC TAAGACGCCC CGTGGGCAAG ACGCCCGAGC AGCTGGATCT GGAAACTCAT
CAGGCACTGG AGGGCTGGCA GGCGCAGCAC CAGGTGTCGC TTGAGGGGAT CGAGACCTAT
TGGGGCGAGC CTAAGTTGAT GGACAAGGCG CCGCATCTGC AGACCCTGCT GTCGGTATTT
GGTCACTTTA CCGATACGCC ATCGCCAAGG CCTGTGGCCA TCGGCGGCTC GACCAACAGC
AAGCTGTTTC CCAATGCACT AAGTTTTGGC CCCGCCATGC CCGGCGTCGA GTATACCGGT
CATAGCGAGC ACGAGTTCAT CACCAAGGCG CAATTTATGC TCAATCTACA GATGTATACC
GCCGCTTTCG TCGAACTGGC TGCATCGACA GAGGAGTTAT CTGAGCAGGC TAAGCAAGGG
ACTAAGCAAA AGACTAAGCA AGCGGCTAAG ACCGGGGCGC AGCGCACCAG CGATTAA
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| Protein sequence | MTLKLSLKAA GAFSLLLCSG LTFATSQADS HLSAQGDSAV SAKPPLQAAP KISALADRVA
QYALNTYGDE TISALSTLIP FKTVETEGMT PLTHPEFIGF KAQLKSLSQS LGLDYSDQGY
VVLIGLGEGE QKLGVITHGD VQPADASFWQ QDPFTLDSQS QPGFLIGRGT EDDKGAIVTA
MYAMKAIKDK GLALNRRIEL LVYLAEESDW APLKAFLTDF TPADINITID AEYPVVTAEK
GWSEIRLTIP KMPKTPKMPK MPKNGKAASS ASASLDGFSG GAFDSQVPQQ AVAKISGLDK
KTIAALKDKA SAQQGMKYQF EQTSSEGQVN GQLTITAEGK STHSSTPEAG VNAVTHLAEL
LKGIHFARSE SAMTAKFIQQ MVGLGLYGEQ FGDIAYEDDF MGPMTLAATL VKPNDQGTEI
VLNLRRPVGK TPEQLDLETH QALEGWQAQH QVSLEGIETY WGEPKLMDKA PHLQTLLSVF
GHFTDTPSPR PVAIGGSTNS KLFPNALSFG PAMPGVEYTG HSEHEFITKA QFMLNLQMYT
AAFVELAAST EELSEQAKQG TKQKTKQAAK TGAQRTSD
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