| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_2145 |
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| Symbol | |
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| ID | 4923365 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 2490993 |
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| End bp | 2492606 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640163730 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001094270 |
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| Protein GI | 127513073 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000018711 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCTTTG TTGTTTGGCA GTTTATGTTG GTAATGAGTT TTTTTGTCGG CAGCGCCTGG
AGCGCGGCGC CAAATAGTTT GGTGGGGGCC TTAAGCGATG CTGCCGCCGA CAGTGGTCAG
AGCCAATTTG TGCGCTCGGT TGAGCACTTC GATTATCAGG ACAGCCTGCA GCGTGATACC
CCAAGGGGCA CGGTAGAAGG CTTTATGGAG GCGGTTTACG AGCAGGATTA TGAGAAGGCG
GCAGAATATC TGGATCTGCG TTACCTGCCC GAGGGGATGT CGGCCAGCAA AGGCGCCGAA
TATGCTAAGC AGCTACAGCT GATCATAGAG CGTAATCTCT GGCTCGACCT GGGCCAGCTC
AACGATACCC CACTTGGGCA GGATAACGAT CAGCTTCCTG CCTATCGGGA TCTCTTCGGC
CGGGTCGCCT TGCAGAGCGA TCAGATCGCC CTCTATCTAC AGCGGGTGCC CAGTGAAGGC
GGCACCATCT GGAAGGTCTC CAATGCTACC GTGGCCAAGG TGCCACAGCT CTATCAAAAC
CTGGGCTATG GGCCCGTGGC CGAGTGGTTT GTCAATCATA TCCCCGAGGG GCGCTGGTTT
AACGTCAACC TGTGGGAGTG GACCCTGCTG CTGGCGTATC TGATCACCGC ATTTCTGGTG
ATGGTGCCCA TTACCTGGAT CATCAAGCGC GTTATCTTGC TAACCCAATA TGAGCTTAAA
GAGGAGCTGG CCTATATCGT CGCCGGGCCA TTGCGTTTAC TGGCAGCCGT GCTATTGGTC
AGAGCCTGGG TGTCTCACAG CAGCATCTCA CCGGCGGCAA TTGAGATGAT AGATACCGGC
TTTCTGTTGG TGTCGGCCAT CATCTGGTTT GGCTGGAGCG CCATGGGGAT CTTCCAGCAG
GGCCTGAAGA AACGCTGGAA AGAGCAGGGT AAAGATCAGG CCGCCTCCCT GCTCAGGCCG
CTGACTAATT TCCTGCGGGT GATCTTCGTG ATCATGGCGG TGCTGTTATG GCTAGAACAC
CTGGGCTTTA ACGCCAGCGC CATCATCGCC GGTATGGGCA TAGGGGGCAT CGCCATCGCG
CTCGCCTCCA AGCAGTCGAT TGAGAACTTT ATCGGTACAA TTACCCTCTA TTCGGCGGCG
CCGATTAAGG TGGGCAACCT GTGTAAATTT GGTAGCATCA GCGGCACGGT CGAGGAGATT
GGCCTGCGCT GCACTCAGAT CCGCACCCTG GACAGGACGC TTATTCACGT GCCCAACGCT
AAGTTAGTGG AGATGGAGAT CGAAAACATC TCCCAGCGCG AGAAGATCCG TTTCAAGGCG
GATATTCGTC TCGATTATGC GGTGACCACC TCGGAGCAGC TCAAGGCGAT TGTCGCCGAG
ATTAAAGCCA TGCTCGAAGA GCATGAGCTG GTGCTCAAAG AGCCCCTCAG GGTCACCTTT
AAGGGCTTCG GTCTCCATGG TCTTCAGGTC AATGTGCTCG CCTATATCGG CACCAAGAGT
TTTCCCACCT TTCAGTTGGC ATCGGAAGAG TTACATTTAA AAATCATGGA TATAGTGGTG
AAGAATGGCT CTCGCATCGT GCCAGTGGCG CCCGTTGCCC TGAATAATGG ATAA
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| Protein sequence | MRFVVWQFML VMSFFVGSAW SAAPNSLVGA LSDAAADSGQ SQFVRSVEHF DYQDSLQRDT
PRGTVEGFME AVYEQDYEKA AEYLDLRYLP EGMSASKGAE YAKQLQLIIE RNLWLDLGQL
NDTPLGQDND QLPAYRDLFG RVALQSDQIA LYLQRVPSEG GTIWKVSNAT VAKVPQLYQN
LGYGPVAEWF VNHIPEGRWF NVNLWEWTLL LAYLITAFLV MVPITWIIKR VILLTQYELK
EELAYIVAGP LRLLAAVLLV RAWVSHSSIS PAAIEMIDTG FLLVSAIIWF GWSAMGIFQQ
GLKKRWKEQG KDQAASLLRP LTNFLRVIFV IMAVLLWLEH LGFNASAIIA GMGIGGIAIA
LASKQSIENF IGTITLYSAA PIKVGNLCKF GSISGTVEEI GLRCTQIRTL DRTLIHVPNA
KLVEMEIENI SQREKIRFKA DIRLDYAVTT SEQLKAIVAE IKAMLEEHEL VLKEPLRVTF
KGFGLHGLQV NVLAYIGTKS FPTFQLASEE LHLKIMDIVV KNGSRIVPVA PVALNNG
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